FC917841

Overview
NameFC917841
Unique NameFC917841
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length904
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917841 vs. ExPASy Swiss-Prot
Match: HEXB2_DICDI (Beta-hexosaminidase subunit B2 OS=Dictyostelium discoideum GN=hexb2 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.365e-33
Identity = 76/204 (37.25%), Postives = 115/204 (56.37%), Query Frame = 1
Query:  298 IWPLPAQFTSGNDTLSVDPALYLXXXXXXXXXXXXXEAFERYKAIIFEHEVEGVNSHSVFNNFRKRRSWGFDIGTLKIVVHSDNEDLQLGVDESYTLLV--AKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHXHIIDEQSFPL 903
            IWP+P +  +G+ T+ + P  +              +A +RY  +IF  + +  +  S+ N              +KI+V S++E LQ+G DESY + +  + ++G  II E      TVYGA+RGLET  Q+  FDY  +   +   PW IQD PR+  RG+++DTSRH+  VDV+K+ IE+++Y K NV H H +D QSFPL
Sbjct:   59 IWPMPKKVLNGDITVYISP--HFQFTTNLTKSTTLKKAMDRYYKLIFTEDSKSHSGISILNE-------------IKILVKSEDETLQIGFDESYEIYIDDSGDDGGKIIAE------TVYGAIRGLETLYQMIGFDYQREYYQIKHCPWIIQDSPRYPHRGVMLDTSRHFYSVDVLKEFIEALAYNKFNVFHWHAVDSQSFPL 241          
BLAST of FC917841 vs. ExPASy Swiss-Prot
Match: HEXB1_DICDI (Beta-hexosaminidase subunit B1 OS=Dictyostelium discoideum GN=hexb1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.979e-28
Identity = 78/203 (38.42%), Postives = 105/203 (51.72%), Query Frame = 1
Query:  298 IWPLPAQFTSGNDTLSVDPALYLXXXXXXXXXXXXXEAFERYKAIIFEHEVEGVNSHSVFNNFRKRRSWGFDIGTLKIVVHSDNEDLQLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKA-PWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHXHIIDEQSFPL 903
            IWP P     GN+++ +                   +   +Y  +IF  +   +NS S  N   K          L I + S NE L+ G DESY L++  NE       + +E NTVYG +RGLETF QL  +++   S  +    P  I DKPRF  RG+++DTSRH+  VD I ++IES+SY K N LH HIID QSFPL
Sbjct:   48 IWPAPFYGQFGNNSILISKEFNFTIISDSTLLLN--KTLSKYYNLIFTQD-NLINSSS--NTLNK----------LNINLKSKNEILKFGFDESYKLIIKNNEN------SKLEGNTVYGIMRGLETFYQLIKYNFSDNSYFIENCLPLIINDKPRFPHRGVMLDTSRHFYSVDTILKVIESLSYNKFNTLHWHIIDSQSFPL 229          
BLAST of FC917841 vs. ExPASy Swiss-Prot
Match: HEXA2_DICDI (Beta-hexosaminidase subunit A2 OS=Dictyostelium discoideum GN=hexa2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.951e-23
Identity = 63/165 (38.18%), Postives = 96/165 (58.18%), Query Frame = 1
Query:  409 AFERYKAIIFEHEVEGVNSHSVFNNFRKRRSWGFDIGTLKIVVHSDNEDLQLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHXHIIDEQSFPL 903
            +  RY+++ F           V NN  K  S   +   L +++ SD+E L+LG+DESY LLV ++          I+ANT+YGA+RGLETF Q+  +D    S  +  A   + D P + +RGLL+D +RH+LP +++  II+SM Y K N +H H+ID  +FP+
Sbjct:   66 SISRYQSLFFPF---------VSNNVLKDSSSNIE---LSLIIASDDETLELGIDESYFLLVNQDT-------YQIKANTIYGAMRGLETFKQMVVYDVVENSYSLTCAE--VVDYPTYQWRGLLVDNARHFLPKNMVLHIIDSMGYNKFNTMHWHLIDTVAFPV 209          
BLAST of FC917841 vs. ExPASy Swiss-Prot
Match: HEXA1_DICDI (Beta-hexosaminidase subunit A1 OS=Dictyostelium discoideum GN=hexa1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.267e-22
Identity = 49/127 (38.58%), Postives = 82/127 (64.57%), Query Frame = 1
Query:  523 LKIVVHSDNEDLQLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHXHIIDEQSFPL 903
            L + ++SD+E LQLG+DESY+L + +       G   ++A  +YGA+RGLETF QL  ++    S  +      I D PR+ +RG ++D++RHY+P ++I  +I+S+ ++K N LH H++D  +FP+
Sbjct:   84 LSVTIYSDDETLQLGIDESYSLSIEQ-------GSYQLKATNIYGAMRGLETFKQLIVYNELENSYSIVCVS--ISDSPRYPWRGFMVDSARHYIPKNMILHMIDSLGFSKFNTLHWHMVDAVAFPV 201          
BLAST of FC917841 vs. ExPASy Swiss-Prot
Match: HEXB_HUMAN (Beta-hexosaminidase subunit beta OS=Homo sapiens GN=HEXB PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 1.619e-21
Identity = 59/111 (53.15%), Postives = 76/111 (68.47%), Query Frame = 1
Query:  571 DESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFD-YDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHXHIIDEQSFP 900
            DESYTLLV +         A ++AN V+GALRGLETFSQL   D Y T ++        I D PRF+ RG+LIDTSRHYLPV +I + +++M++ K NVLH HI+D+QSFP
Sbjct:  146 DESYTLLVKEPV-------AVLKANRVWGALRGLETFSQLVYQDSYGTFTINEST----IIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFP 245          
BLAST of FC917841 vs. ExPASy Swiss-Prot
Match: HEXB_RAT (Beta-hexosaminidase subunit beta OS=Rattus norvegicus GN=Hexb PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.371e-20
Identity = 58/111 (52.25%), Postives = 74/111 (66.67%), Query Frame = 1
Query:  571 DESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFD-YDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHXHIIDEQSFP 900
            DESY+LLV +   L       ++AN V+GALRGLETFSQL   D Y T ++        I D PRF  RG+LIDTSRHYLPV  I + +++M++ K NVLH HI+D+QSFP
Sbjct:  124 DESYSLLVQEPVAL-------LKANEVWGALRGLETFSQLVYQDAYGTFTINEST----IADSPRFPHRGILIDTSRHYLPVKTIFKTLDAMAFNKFNVLHWHIVDDQSFP 223          
BLAST of FC917841 vs. ExPASy Swiss-Prot
Match: HEXB_MOUSE (Beta-hexosaminidase subunit beta OS=Mus musculus GN=Hexb PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.053e-20
Identity = 58/127 (45.67%), Postives = 80/127 (62.99%), Query Frame = 1
Query:  523 LKIVVHSDNEDL-QLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHXHIIDEQSFP 900
            + I + S+ E    L  DE+Y+LLV +         A ++AN+V+GALRGLETFSQL   D      +   +   I D PRF  RG+LIDTSRH+LPV  I + +++M++ K NVLH HI+D+QSFP
Sbjct:  108 VSITLESECESFPSLSSDETYSLLVQEPV-------AVLKANSVWGALRGLETFSQLVYQDSFGTFTINESS---IADSPRFPHRGILIDTSRHFLPVKTILKTLDAMAFNKFNVLHWHIVDDQSFP 224          
BLAST of FC917841 vs. ExPASy Swiss-Prot
Match: HEXB_FELCA (Beta-hexosaminidase subunit beta OS=Felis catus GN=HEXB PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.988e-20
Identity = 73/173 (42.20%), Postives = 97/173 (56.07%), Query Frame = 1
Query:  406 EAFERYKAIIFEHEVEGVNSHSVFNNFRKRR----SWGFDIGTLKIVVHSDNE-DL--QLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFD-YDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHXHIIDEQSFP 900
            EAF RY   IF  +             R+RR    +   ++  L + V  D+E DL   +  DESYTLLV +         A ++AN V+G LRGLETFSQL   D Y T +V        I D PRF  RG+LIDT+RH+LPV  I + +++M++ K NVLH HI+D+QSFP
Sbjct:   70 EAFRRYHEYIFGFDK------------RQRRPAKPNSAIELQQLLVTVVLDSECDLFPNITSDESYTLLVKEPV-------AFLKANRVWGVLRGLETFSQLIYQDSYGTFTVNESD----IIDSPRFPHRGILIDTARHFLPVKSILKTLDAMAFNKFNVLHWHIVDDQSFP 219          
BLAST of FC917841 vs. ExPASy Swiss-Prot
Match: HEXA_RAT (Beta-hexosaminidase subunit alpha OS=Rattus norvegicus GN=Hexa PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.988e-20
Identity = 62/165 (37.58%), Postives = 92/165 (55.76%), Query Frame = 1
Query:  406 EAFERYKAIIFEHEVEGVNSHSVFNNFRKRRSWGFDIGTLKIVVHSDNEDLQLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHXHIIDEQSFP 900
            EAF RY++++F     G  S    +  +K++  G +I  + +V    NE   L   E+YTL +  ++ L       + + TV+GALRGLETFSQL    + +     +     I D PRF  RG+L+DTSRHYLP+  I   ++ M+Y K NV H H++D+ SFP
Sbjct:   63 EAFRRYRSLLF-----GSGSWPRPSFSKKQQPLGKNILMVSVVTAECNEFPNLESVENYTLTINDDQCL-------LSSETVWGALRGLETFSQLV---WKSAEGTFFINKTKITDFPRFPHRGILLDTSRHYLPLSSILNTLDVMAYNKFNVFHWHLVDDSSFP 212          
BLAST of FC917841 vs. ExPASy Swiss-Prot
Match: HEXA_MOUSE (Beta-hexosaminidase subunit alpha OS=Mus musculus GN=Hexa PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.988e-20
Identity = 63/165 (38.18%), Postives = 93/165 (56.36%), Query Frame = 1
Query:  406 EAFERYKAIIFEHEVEGVNSHSVFNNFRKRRSWGFDIGTLKIVVHSDNEDLQLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHXHIIDEQSFP 900
            EAF RY+ ++F     G      F+N  K+++ G +I  + +V    NE   L   E+YTL +  ++ L       + + TV+GALRGLETFSQL    + +     +     I+D PRF  RG+L+DTSRHYLP+  I   ++ M+Y K NV H H++D+ SFP
Sbjct:   63 EAFRRYRNLLFG---SGSWPRPSFSN--KQQTLGKNILVVSVVTAECNEFPNLESVENYTLTINDDQCL-------LASETVWGALRGLETFSQLV---WKSAEGTFFINKTKIKDFPRFPHRGVLLDTSRHYLPLSSILDTLDVMAYNKFNVFHWHLVDDSSFP 212          
The following BLAST results are available for this feature:
BLAST of FC917841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
HEXB2_DICDI5.365e-3337.25Beta-hexosaminidase subunit B2 OS=Dictyostelium di... [more]
HEXB1_DICDI3.979e-2838.42Beta-hexosaminidase subunit B1 OS=Dictyostelium di... [more]
HEXA2_DICDI2.951e-2338.18Beta-hexosaminidase subunit A2 OS=Dictyostelium di... [more]
HEXA1_DICDI7.267e-2238.58Beta-hexosaminidase subunit A1 OS=Dictyostelium di... [more]
HEXB_HUMAN1.619e-2153.15Beta-hexosaminidase subunit beta OS=Homo sapiens G... [more]
HEXB_RAT1.371e-2052.25Beta-hexosaminidase subunit beta OS=Rattus norvegi... [more]
HEXB_MOUSE3.053e-2045.67Beta-hexosaminidase subunit beta OS=Mus musculus G... [more]
HEXB_FELCA3.988e-2042.20Beta-hexosaminidase subunit beta OS=Felis catus GN... [more]
HEXA_RAT3.988e-2037.58Beta-hexosaminidase subunit alpha OS=Rattus norveg... [more]
HEXA_MOUSE3.988e-2038.18Beta-hexosaminidase subunit alpha OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AC02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA100AC02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917841 ID=FC917841; Name=FC917841; organism=Citrus clementina; type=EST; length=904bp
ACCGCCATTACGGCTAAAAGAACAGCTTAAAAGAGTAAAAACTGTAACTA
CTTTTTGTCCTGTCTTTATGAGTTCATTCACCTGACTAACTGGTATCTCT
CCTCCACTTTCGCTTCGCTGCAGCTGTTCATCAGATCACTTTGGTTTTCC
AAAGGAATCTCCGTAAACCAAACCACAATGTTGCTCAAATCCCAAGAACA
TCTCTCAGTTCTCAAAGTTATAATCATCACCGCACTTCTCATCATTTTCA
CTTCCTCCCTTTCTGTCTCCACCGACGTGGACGATTCCCTCGCTTACATC
TGGCCTTTGCCAGCGCAATTCACTTCCGGTAACGACACGCTCTCCGTTGA
CCCAGCTCTTTATCTCTCCGTTTCGGGAAAAGGGTCGGGCTCGAAGATTG
TTAAAGAAGCGTTCGAGAGATACAAAGCTATTATTTTCGAGCACGAAGTC
GAAGGGGTTAATTCCCATTCTGTGTTTAATAATTTTAGAAAGAGGAGATC
GTGGGGTTTTGATATTGGAACATTGAAGATTGTTGTTCATTCGGATAATG
AAGACTTGCAGCTTGGTGTTGATGAGAGTTACACTTTGTTGGTGGCTAAG
AATGAGGGGCTGTCAATTATTGGAGAGGCAACAATAGAGGCAAATACAGT
TTATGGTGCTCTGCGAGGATTGGAGACATTCAGCCAATTGTGTTCTTTTG
ACTATGATACTAAATCCGTACTAGTATATAAAGCACCGTGGTACATCCAA
GACAAACCAAGATTTGCATTTCGTGGCCTTCTGATTGATACATCAAGGCA
CTATTTACCAGTAGATGTCATTAAGCAGATAATTGAATCTATGTCATATG
CAAAACTTAATGTCCTTCATTGNCATATCATAGACGAGCAGTCATTTCCT
CTTG
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