FC918263
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC918263 vs. ExPASy Swiss-Prot
Match: PSMD4_ARATH (26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis thaliana GN=MBP1 PE=1 SV=1) HSP 1 Score: 346.665 bits (888), Expect = 1.021e-94 Identity = 175/236 (74.15%), Postives = 198/236 (83.90%), Query Frame = 3 Query: 81 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDD-GKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 785 MVLEATMICIDNSEWMRNGDYSPSRL+AQ +AV+L+CGAKTQSNPENTVGILTM GKGVRVLTTPT+DLGKILACMH LD+GGE+N+ A IQ+AQLALKHRQNKNQRQRIIVFAGSP+KY++K +E++GK+LKKNSV++DIVNFGEDDD KP+KLEALL AVNNND SH+VHVP+G NALSDVL+S+PVFT VDPNIDPELALALRVSM Sbjct: 1 MVLEATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVRVLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKYEKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVNNNDGSHIVHVPSGANALSDVLLSTPVFT--GDEGASGYVSAAAAAAAAGGDFDFGVDPNIDPELALALRVSM 234
BLAST of FC918263 vs. ExPASy Swiss-Prot
Match: PSMD4_DICDI (26S proteasome non-ATPase regulatory subunit 4 OS=Dictyostelium discoideum GN=psmD4 PE=2 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 5.476e-56 Identity = 111/235 (47.23%), Postives = 156/235 (66.38%), Query Frame = 3 Query: 81 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 785 M LEAT++C+DNSEWMRNGD++PSR AQ DAV+LIC +KTQSNPE+ V I++M GK VL T T +L KIL+ EL I G+++ + +Q+AQLAL+HRQN +Q RII F GSP+K ++ + + K+LKKN VA+DI+NFGE + +KLEA + VNNND SHL+ VP GP+ LSD+++ SP+ ++ + DP+LA+AL++S+ Sbjct: 1 MTLEATIVCLDNSEWMRNGDFTPSRSEAQKDAVNLICASKTQSNPESAVSIMSMAGKKPEVLVTLTQELSKILSGAQELKINGKIDFSTTMQIAQLALRHRQNNHQHPRIIAFVGSPLKETKEELIQLAKRLKKNGVAVDIINFGEVTENS-DKLEAFINDVNNNDESHLLTVPPGPHILSDIILQSPI-----------------VESGSGQFGSEFINADTDPDLAMALKLSL 217
BLAST of FC918263 vs. ExPASy Swiss-Prot
Match: PSMD4_MOUSE (26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus GN=Psmd4 PE=1 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.649e-52 Identity = 115/237 (48.52%), Postives = 153/237 (64.56%), Query Frame = 3 Query: 81 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 785 MVLE+TM+C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+ VLTT T D G+IL+ +H + G++ GI+VA LALKHRQ KN + RII F GSPV+ + K + + K+LKK V +DI+NFGE ++ EKL A + +N D SHLV VP GP +L+D LISSP+ VDP+ DPELALALRVSM Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPILA----------GEGGAMLGLGASDFEFGVDPSADPELALALRVSM 224
BLAST of FC918263 vs. ExPASy Swiss-Prot
Match: PSMD4_HUMAN (26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens GN=PSMD4 PE=1 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.649e-52 Identity = 115/237 (48.52%), Postives = 153/237 (64.56%), Query Frame = 3 Query: 81 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 785 MVLE+TM+C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+ VLTT T D G+IL+ +H + G++ GI+VA LALKHRQ KN + RII F GSPV+ + K + + K+LKK V +DI+NFGE ++ EKL A + +N D SHLV VP GP +L+D LISSP+ VDP+ DPELALALRVSM Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPILA----------GEGGAMLGLGASDFEFGVDPSADPELALALRVSM 224
BLAST of FC918263 vs. ExPASy Swiss-Prot
Match: PSMD4_BOVIN (26S proteasome non-ATPase regulatory subunit 4 OS=Bos taurus GN=PSMD4 PE=2 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.649e-52 Identity = 115/237 (48.52%), Postives = 153/237 (64.56%), Query Frame = 3 Query: 81 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 785 MVLE+TM+C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+ VLTT T D G+IL+ +H + G++ GI+VA LALKHRQ KN + RII F GSPV+ + K + + K+LKK V +DI+NFGE ++ EKL A + +N D SHLV VP GP +L+D LISSP+ VDP+ DPELALALRVSM Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPILA----------GEGGAMLGLGASDFEFGVDPSADPELALALRVSM 224
BLAST of FC918263 vs. ExPASy Swiss-Prot
Match: RPN10_SCHPO (26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces pombe GN=rpn10 PE=1 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 1.182e-50 Identity = 109/235 (46.38%), Postives = 141/235 (60.00%), Query Frame = 3 Query: 81 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 785 MVLEATMI IDNSEWM NGDY P+R AQ D V +I K NPEN G++T+G +VL+T T D GK L+ MH+L + G GIQ+AQLALKHR+NK QRQRI+ F GSP+ D K + + K++KKN+VAIDI++ GE + L+ + A N++DS HLV +P P LSD++ SP+ VDPN+D ELALAL +SM Sbjct: 1 MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQN--ESALQHFIDAANSSDSCHLVSIPPSPQLLSDLVNQSPI---------------GQGVVASQNQFEYGVDPNLDVELALALELSM 218
BLAST of FC918263 vs. ExPASy Swiss-Prot
Match: RPN10_YEAST (26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae GN=RPN10 PE=1 SV=3) HSP 1 Score: 196.438 bits (498), Expect = 1.706e-49 Identity = 108/237 (45.57%), Postives = 147/237 (62.03%), Query Frame = 3 Query: 81 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNN--NDSSHLVHVPTGPNALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 785 MVLEAT++ IDNSE+ RNGD+ +R AQ D+V I AK SNPENTVG+++ G RVL+T T + GKILA +H+ I G++++A +Q+AQL LKHRQNK Q QRI+ F SP+ R + + K LKKN+VA+DI+NFGE + E L+ +AAVNN ++SHL+ V GP L + + SSP+ VDP++DPELA+ALR+SM Sbjct: 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQ-NTELLDEFIAAVNNPQEETSHLLTVTPGPRLLYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSM 236
BLAST of FC918263 vs. ExPASy Swiss-Prot
Match: PSMD4_DROME (26S proteasome non-ATPase regulatory subunit 4 OS=Drosophila melanogaster GN=Pros54 PE=1 SV=2) HSP 1 Score: 191.045 bits (484), Expect = 7.169e-48 Identity = 110/237 (46.41%), Postives = 143/237 (60.34%), Query Frame = 3 Query: 81 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 785 MVLE+TMIC DNS++ RNGDY P+RL Q D ++L+C K +SNPEN VG++T+ V VL T T+D G+I + MH + GE+N+ GI++A L LKHRQ KN + RI+VF GSP+ ++ + K+LKK V +DIV+FG D E L A + A+N D SHLV VP G + LSD L+SSP+ VDPN DPELALALRVSM Sbjct: 1 MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNT-VEVLATLTSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINHEEGDLVKQAKRLKKEKVNVDIVSFG-DHGNNNEILTAFINALNGKDGTGSHLVSVPRG-SVLSDALLSSPII---------QGEDGMGGAGLGGNVFEFGVDPNEDPELALALRVSM 225
BLAST of FC918263 vs. ExPASy Swiss-Prot
Match: PIPSL_HUMAN (Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL PE=5 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 1.184e-42 Identity = 103/235 (43.83%), Postives = 138/235 (58.72%), Query Frame = 3 Query: 87 LEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 785 L+ +DNSE+M NGD+ P+RL+AQ DAV+ +C +KT+SNPEN VG++T+ VLTT T D G+IL+ +H + G++ GI VA LALKHRQ N + RII F G+PV+ + K + + K LKK V +DI+NFGE ++ EKL A + +N D SHLV VP GP +L+D LIS P+ VDP+ DPELAL LRV M Sbjct: 488 LQMLTTSVDNSEYMGNGDFLPTRLQAQQDAVNTVCHSKTRSNPENNVGLITLDND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCMGIHVAHLALKHRQGNNHKIRIIAFVGNPVEDNEKNLVKLAKCLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISFPILA----------GEGGAMMGLGASDFEFGVDPSADPELALVLRVFM 709
BLAST of FC918263 vs. ExPASy Swiss-Prot
Match: PSMD4_SCHMA (26S proteasome non-ATPase regulatory subunit 4 OS=Schistosoma mansoni PE=2 SV=2) HSP 1 Score: 161.77 bits (408), Expect = 4.658e-39 Identity = 95/237 (40.08%), Postives = 137/237 (57.81%), Query Frame = 3 Query: 81 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 785 M EAT+I +DNS++MRNGD+ P+RL+AQ DAV LIC +K Q NPENT+G+L++ VL T T D+ KI +H ++ G + + I++A LAL+HRQ ++Q+ RI+ F GSP+ D K + + K+LKK V +DI+NFGE++ + +KL + +N D SHL+ V G L D L++SPV +D DP+L ALRVSM Sbjct: 1 MSQEATIIAVDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLAN--TEVLCTLTNDVSKIYNRLHLVEPKGRIIFCSSIRIAHLALRHRQLRHQKMRIVCFIGSPILEDEKELTRLAKRLKKEKVNVDIINFGENETNE-QKLSEFIDTLNGKDGTGSHLISVAPG-TVLHDTLMTSPVVA----------GEDGSGMAGAGLGLEFGLDGAEDPDLLYALRVSM 223 The following BLAST results are available for this feature:
BLAST of FC918263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC918263 ID=FC918263; Name=FC918263; organism=Citrus clementina; type=EST; length=866bpback to top |