FC919317

Overview
NameFC919317
Unique NameFC919317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length397
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC919317 vs. ExPASy Swiss-Prot
Match: LCYE_ARATH (Lycopene epsilon cyclase, chloroplastic OS=Arabidopsis thaliana GN=LUT2 PE=1 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 7.315e-51
Identity = 93/126 (73.81%), Postives = 108/126 (85.71%), Query Frame = 1
Query:    1 YXVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEAPSFESDNPTFLYVMPMSSTRVFFEETCLASKDGLRFDILKKKLMARLERLGIHVLKTYEEEWSYIPVGGSLPNTEQRNLAYGA 378
            Y VGGP+V VQTAYGVEVEVEN+PYDP  MVFMDYRD T ++  S E++ PTFLY MPM+ +R+FFEETCLASKD + FD+LK KLM RL+ LGI +LKTYEEEWSYIPVGGSLPNTEQ+NLA+GA
Sbjct:  254 YEVGGPRVCVQTAYGVEVEVENSPYDPDQMVFMDYRDYTNEKVRSLEAEYPTFLYAMPMTKSRLFFEETCLASKDVMPFDLLKTKLMLRLDTLGIRILKTYEEEWSYIPVGGSLPNTEQKNLAFGA 379          
BLAST of FC919317 vs. ExPASy Swiss-Prot
Match: LCYE_SOLLC (Lycopene epsilon cyclase, chloroplastic OS=Solanum lycopersicum GN=CRTL-E-1 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 3.630e-50
Identity = 92/126 (73.02%), Postives = 106/126 (84.13%), Query Frame = 1
Query:    1 YXVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEAPSFESDNPTFLYVMPMSSTRVFFEETCLASKDGLRFDILKKKLMARLERLGIHVLKTYEEEWSYIPVGGSLPNTEQRNLAYGA 378
            Y +G P+VSVQTAYGVEVEV+NNP+DPSLMVFMDYRD  + +A S E+  PTFLY MPMS TRVFFEETCLASKD + FD+LKKKLM RL  LG+ + + YEEEWSYIPVGGSLPNTEQ+ LA+GA
Sbjct:  251 YELGSPRVSVQTAYGVEVEVDNNPFDPSLMVFMDYRDYLRHDAQSLEAKYPTFLYAMPMSPTRVFFEETCLASKDAMPFDLLKKKLMLRLNTLGVRIKEIYEEEWSYIPVGGSLPNTEQKTLAFGA 376          
BLAST of FC919317 vs. ExPASy Swiss-Prot
Match: LCYB_SOLLC (Lycopene beta cyclase, chloroplastic OS=Solanum lycopersicum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.452e-22
Identity = 54/118 (45.76%), Postives = 73/118 (61.86%), Query Frame = 1
Query:   31 QTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEAPSFESDN---PTFLYVMPMSSTRVFFEETCLASKDGLRFDILKKKLMARLERLGIHVLKTYEEEWSYIPVGGSLPNTEQRNLAYG 375
            Q AYG+  EVE +P+D + MVFMD+RD   +     +  N   PTFLY MP SS R+F EET L ++ GLR D ++++++ARL  LGI V    E+E   IP+GG LP   QR +  G
Sbjct:  238 QVAYGILAEVEEHPFDVNKMVFMDWRDSHLKNNTDLKERNSRIPTFLYAMPFSSNRIFLEETSLVARPGLRIDDIQERMVARLNHLGIKVKSIEEDEHCLIPMGGPLPVLPQRVVGIG 355          
BLAST of FC919317 vs. ExPASy Swiss-Prot
Match: LCYB_ARATH (Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana GN=LCY1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.452e-22
Identity = 53/118 (44.92%), Postives = 74/118 (62.71%), Query Frame = 1
Query:   31 QTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEAPSFESDN---PTFLYVMPMSSTRVFFEETCLASKDGLRFDILKKKLMARLERLGIHVLKTYEEEWSYIPVGGSLPNTEQRNLAYG 375
            Q AYG+  EV+ +P+D   MVFMD+RD      P  +  N   PTFLY MP SS R+F EET L ++ GLR + +++++ ARL+ LGI+V +  E+E   IP+GG LP   QR +  G
Sbjct:  237 QVAYGIVAEVDGHPFDVDKMVFMDWRDKHLDSYPELKERNSKIPTFLYAMPFSSNRIFLEETSLVARPGLRMEDIQERMAARLKHLGINVKRIEEDERCVIPMGGPLPVLPQRVVGIG 354          
BLAST of FC919317 vs. ExPASy Swiss-Prot
Match: LCYB_TOBAC (Lycopene beta cyclase, chloroplastic OS=Nicotiana tabacum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.463e-22
Identity = 55/122 (45.08%), Postives = 73/122 (59.84%), Query Frame = 1
Query:   19 KVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEAPSFESDN---PTFLYVMPMSSTRVFFEETCLASKDGLRFDILKKKLMARLERLGIHVLKTYEEEWSYIPVGGSLPNTEQRNLAYG 375
            K   Q AYG+  EVE +P+D S MV MD+RD         +  N   PTFLY MP SS ++F EET L ++ GLR D ++++++ARL  LGI V    E+E   IP+GGSLP   QR +  G
Sbjct:  234 KPGYQVAYGILAEVEEHPFDTSKMVLMDWRDSHLGNNMELKERNRKVPTFLYAMPFSSNKIFLEETSLVARPGLRMDDIQERMVARLNHLGIKVKSIEEDEHCVIPMGGSLPVIPQRVVGTG 355          
BLAST of FC919317 vs. ExPASy Swiss-Prot
Match: LCYB_CAPAN (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Capsicum annuum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.076e-21
Identity = 53/118 (44.92%), Postives = 72/118 (61.02%), Query Frame = 1
Query:   31 QTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEAPSFESDN---PTFLYVMPMSSTRVFFEETCLASKDGLRFDILKKKLMARLERLGIHVLKTYEEEWSYIPVGGSLPNTEQRNLAYG 375
            Q AYG+  EVE +P+D + MVFMD+RD   +     +  N   PTFLY MP SS R+F EET L ++ GL  D ++++++ARL  LGI V    E+E   IP+GG LP   QR +  G
Sbjct:  236 QVAYGILAEVEEHPFDVNKMVFMDWRDSHLKNNVELKERNSRIPTFLYAMPFSSNRIFLEETSLVARPGLGMDDIQERMVARLSHLGIKVKSIEEDEHCVIPMGGPLPVLPQRVVGIG 353          
BLAST of FC919317 vs. ExPASy Swiss-Prot
Match: LCYB_NARPS (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=LCY1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.541e-21
Identity = 52/118 (44.07%), Postives = 72/118 (61.02%), Query Frame = 1
Query:   31 QTAYGVEVEVENNPYDPSLMVFMDYRDCT---KQEAPSFESDNPTFLYVMPMSSTRVFFEETCLASKDGLRFDILKKKLMARLERLGIHVLKTYEEEWSYIPVGGSLPNTEQRNLAYG 375
            Q AYG+  EVE +P+D   MVFMD+RD     K E     +  PTFLY MP SS R+F EET L ++ GL+ + ++++++ARL  LGI +    E+E   IP+GG LP   QR +  G
Sbjct:  241 QVAYGILAEVEEHPFDVDKMVFMDWRDSHLNGKAELNERNAKIPTFLYAMPFSSNRIFLEETSLVARPGLKMEDIQERMVARLNHLGIRIKSIEEDERCVIPMGGPLPVIPQRVVGIG 358          
BLAST of FC919317 vs. ExPASy Swiss-Prot
Match: NXS_SOLTU (Neoxanthin synthase, chloroplastic OS=Solanum tuberosum GN=NXS PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.488e-19
Identity = 53/118 (44.92%), Postives = 68/118 (57.63%), Query Frame = 1
Query:   31 QTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEAPSFESDN---PTFLYVMPMSSTRVFFEETCLASKDGLRFDILKKKLMARLERLGIHVLKTYEEEWSYIPVGGSLPNTEQRNLAYG 375
            Q A+GV VEV+N+P+D   MV MD+RD      P    +N   PTFLY MP     VF EET L S+  L +  +K++++ARL  LGI V    EEE   IP+GG LP   Q  +A G
Sbjct:  236 QIAHGVLVEVDNHPFDLDKMVLMDWRDSHLGNEPYLRVNNAKEPTFLYAMPFDRNLVFLEETSLVSRPVLSYMEVKRRMVARLRHLGIKVRSVIEEEKCVIPMGGPLPRIPQNVMAIG 353          
BLAST of FC919317 vs. ExPASy Swiss-Prot
Match: CCS_CITSI (Capsanthin/capsorubin synthase, chromoplast OS=Citrus sinensis GN=CCS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.259e-18
Identity = 50/118 (42.37%), Postives = 67/118 (56.78%), Query Frame = 1
Query:   31 QTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEAPSFESDN---PTFLYVMPMSSTRVFFEETCLASKDGLRFDILKKKLMARLERLGIHVLKTYEEEWSYIPVGGSLPNTEQRNLAYG 375
            Q A+G+  EVE++P+D   MV MD+RD      P   + N   PTFLY MP  S  VF EET L S+  L +  +K ++ ARL  +GI V +  E+E   IP+GG LP   Q  +A G
Sbjct:  241 QIAHGILAEVESHPFDLDKMVLMDWRDSHLGNEPYLRASNLKLPTFLYAMPFDSNLVFLEETSLVSRPVLSYKEVKSRMAARLRHMGIRVKRVIEDEKCLIPMGGPLPVIPQSVMAIG 358          
BLAST of FC919317 vs. ExPASy Swiss-Prot
Match: CCS_CAPAN (Capsanthin/capsorubin synthase, chromoplast OS=Capsicum annuum GN=CCS PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.392e-17
Identity = 49/118 (41.53%), Postives = 65/118 (55.08%), Query Frame = 1
Query:   31 QTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEAPSFESDN---PTFLYVMPMSSTRVFFEETCLASKDGLRFDILKKKLMARLERLGIHVLKTYEEEWSYIPVGGSLPNTEQRNLAYG 375
            Q A+G+  EV+N+P+D   M+ MD+RD      P     N   PTFLY MP     VF EET L S+  L +  +K++++ARL  LGI V    EEE   I +GG LP   Q  +A G
Sbjct:  236 QVAHGILAEVDNHPFDLDKMMLMDWRDSHLGNEPYLRVKNTKEPTFLYAMPFDRNLVFLEETSLVSRPMLSYMEVKRRMVARLRHLGIKVRSVLEEEKCVITMGGPLPRIPQNVMAIG 353          
The following BLAST results are available for this feature:
BLAST of FC919317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
LCYE_ARATH7.315e-5173.81Lycopene epsilon cyclase, chloroplastic OS=Arabido... [more]
LCYE_SOLLC3.630e-5073.02Lycopene epsilon cyclase, chloroplastic OS=Solanum... [more]
LCYB_SOLLC2.452e-2245.76Lycopene beta cyclase, chloroplastic OS=Solanum ly... [more]
LCYB_ARATH2.452e-2244.92Lycopene beta cyclase, chloroplastic OS=Arabidopsi... [more]
LCYB_TOBAC5.463e-2245.08Lycopene beta cyclase, chloroplastic OS=Nicotiana ... [more]
LCYB_CAPAN2.076e-2144.92Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
LCYB_NARPS3.541e-2144.07Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
NXS_SOLTU1.488e-1944.92Neoxanthin synthase, chloroplastic OS=Solanum tube... [more]
CCS_CITSI1.259e-1842.37Capsanthin/capsorubin synthase, chromoplast OS=Cit... [more]
CCS_CAPAN1.392e-1741.53Capsanthin/capsorubin synthase, chromoplast OS=Cap... [more]

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Properties
Property NameValue
Genbank descriptionC06055B10T7 PCR Citrus clementina cDNA clone C06055B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919317 ID=FC919317; Name=FC919317; organism=Citrus clementina; type=EST; length=397bp
TATNAGGTGGGGGGTCCCAAGGTTTCTGTCCAAACAGCTTATGGTGTGGA
GGTTGAGGTGGAAAATAATCCATATGATCCAAGCCTTATGGTTTTCATGG
ACTACAGAGACTGTACTAAGCAAGAAGCTCCATCTTTTGAATCTGACAAT
CCAACATTTCTTTATGTCATGCCCATGTCTTCAACAAGAGTTTTCTTTGA
GGAAACTTGTTTGGCATCGAAAGATGGTTTACGTTTTGACATATTGAAGA
AAAAGCTCATGGCAAGGTTAGAGAGATTGGGAATCCACGTTTTGAAAACT
TATGAAGAGGAATGGTCATATATTCCAGTTGGTGGTTCCTTACCAAATAC
AGAACAAAGAAACCTCGCATATGGTGCTGTCTAGATGAATCACTAGT
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