FC920510
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA1_ARATH (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH1-1 PE=1 SV=1) HSP 1 Score: 257.299 bits (656), Expect = 2.439e-85 Identity = 129/174 (74.14%), Postives = 137/174 (78.74%), Query Frame = 2 Query: 146 MWRCVSRGLGLSSYRSKRSVSNDSLRSHFSRLFSTNST---GGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658 MWRCVSRG + ++ S+ + S FSR FST ST YTIVDHTYD LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNM+EDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTE+GKIYQRAFGGQSLDFGK G+ Sbjct: 1 MWRCVSRGFRAPASKTS-SLFDGVSGSRFSRFFSTGSTDTRSSYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEEGKIYQRAFGGQSLDFGKGGQ 173 HSP 2 Score: 80.1073 bits (196), Expect = 2.439e-85 Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 1 Query: 640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753 F KGGQAYRCACAADRTGHALLHTLYGQAMKHNTQ FV Sbjct: 168 FGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFV 205
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_ORYSJ (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Oryza sativa subsp. japonica GN=SDH1 PE=2 SV=1) HSP 1 Score: 250.366 bits (638), Expect = 4.960e-83 Identity = 128/172 (74.42%), Postives = 137/172 (79.65%), Query Frame = 2 Query: 146 MWR-CVSRGLGLSSYRSKRSVSNDSLRSHFSRLFSTNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658 MWR CVSRGL S + S+ + S +RLFST S+ YT+VDH+YD LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQD+IQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGK G+ Sbjct: 1 MWRGCVSRGL--RSLSKGKGSSSSAPVSAAARLFSTASSS-YTVVDHSYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDSIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQ 169 HSP 2 Score: 79.337 bits (194), Expect = 4.960e-83 Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 1 Query: 640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753 F KGGQAYRCACAADRTGHA+LHTLYGQAMKHNTQ FV Sbjct: 164 FGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFV 201
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA2_ARATH (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH1-2 PE=1 SV=1) HSP 1 Score: 241.121 bits (614), Expect = 1.436e-79 Identity = 124/176 (70.45%), Postives = 133/176 (75.57%), Query Frame = 2 Query: 146 MWRCVSRGLGLSSYRSKRSVSNDS-LRSHFSRLFSTNSTGG----YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658 MWRC+ + S+RS SN + + S SR FS + G YTIVDHTYD LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNM+ DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSL+FG G+ Sbjct: 1 MWRCLR-----VASSSRRSESNGAFITSQLSRFFSAPPSAGDKSSYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSVDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLEFGIGGQ 171 HSP 2 Score: 77.0258 bits (188), Expect = 1.436e-79 Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 1 Query: 640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753 F GGQAYRCACAADRTGHALLHTLYGQAMKHNTQ FV Sbjct: 166 FGIGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFV 203
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_SCHPO (Probable succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Schizosaccharomyces pombe GN=sdh1 PE=2 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 1.089e-67 Identity = 101/155 (65.16%), Postives = 121/155 (78.06%), Query Frame = 2 Query: 194 KRSVSNDSLRSHFSRLFSTNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658 K+ S+ LR+ + ST+ + Y ++DHTYD L+E GFNTACITKLFPTRSHTVAAQGGINAALGNMT+DDWRWH YDTVKGSDWLGDQDAI YM +EAPKAV+ELE++G+PFSRT++GKIYQRAFGGQSL++GK G+ Sbjct: 27 KKIASSQPLRA---KQVSTSESVKYPVIDHTYDAIVVGAGGAGLRATFGLAEAGFNTACITKLFPTRSHTVAAQGGINAALGNMTKDDWRWHFYDTVKGSDWLGDQDAIHYMTKEAPKAVLELEHFGVPFSRTKEGKIYQRAFGGQSLEYGKGGQ 178 HSP 2 Score: 67.3958 bits (163), Expect = 1.089e-67 Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 1 Query: 640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753 + KGGQAYRCA ADRTGH++LHTLYGQ++KHNT F+ Sbjct: 173 YGKGGQAYRCAAVADRTGHSILHTLYGQSLKHNTNFFI 210
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_PONAB (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Pongo abelii GN=SDHA PE=2 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 1.411e-64 Identity = 97/138 (70.29%), Postives = 107/138 (77.54%), Query Frame = 2 Query: 245 STNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658 S + + Y +VDH +D LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM ED+WRWH YDTVKGSDWLGDQDAI YM +AP AV+ELENYG+PFSRTEDGKIYQRAFGGQSL FGK G+ Sbjct: 48 SDSISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQ 185 HSP 2 Score: 62.7734 bits (151), Expect = 1.411e-64 Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1 Query: 640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753 F KGGQA+RC C ADRTGH+LLHTLYG++++++T FV Sbjct: 180 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFV 217
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_MACFA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Macaca fascicularis GN=SDHA PE=2 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 1.411e-64 Identity = 97/138 (70.29%), Postives = 107/138 (77.54%), Query Frame = 2 Query: 245 STNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658 S + + Y +VDH +D LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM ED+WRWH YDTVKGSDWLGDQDAI YM +AP AV+ELENYG+PFSRTEDGKIYQRAFGGQSL FGK G+ Sbjct: 48 SDSISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQ 185 HSP 2 Score: 62.7734 bits (151), Expect = 1.411e-64 Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1 Query: 640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753 F KGGQA+RC C ADRTGH+LLHTLYG++++++T FV Sbjct: 180 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFV 217
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_HUMAN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Homo sapiens GN=SDHA PE=1 SV=2) HSP 1 Score: 205.297 bits (521), Expect = 1.411e-64 Identity = 97/138 (70.29%), Postives = 107/138 (77.54%), Query Frame = 2 Query: 245 STNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658 S + + Y +VDH +D LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM ED+WRWH YDTVKGSDWLGDQDAI YM +AP AV+ELENYG+PFSRTEDGKIYQRAFGGQSL FGK G+ Sbjct: 48 SDSISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQ 185 HSP 2 Score: 62.7734 bits (151), Expect = 1.411e-64 Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1 Query: 640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753 F KGGQA+RC C ADRTGH+LLHTLYG++++++T FV Sbjct: 180 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFV 217
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_DANRE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Danio rerio GN=sdha PE=2 SV=2) HSP 1 Score: 204.527 bits (519), Expect = 2.400e-64 Identity = 102/171 (59.65%), Postives = 118/171 (69.01%), Query Frame = 2 Query: 167 GLGLSSYRSKRSVSNDSLRSHFS-------RLFSTNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658 G + S +S +V + + HFS S + Y +VDH +D LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM +DDWRWH YDTVKGSDWLGDQDAI YM +AP AV+ELEN+G+PFSRT+DGKIYQRAFGGQSL FGK G+ Sbjct: 12 GTKILSCKSLPAVCQANRQLHFSIYGKRGDAKISDGVSNQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEQDDWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENFGMPFSRTDDGKIYQRAFGGQSLKFGKGGQ 182 HSP 2 Score: 62.7734 bits (151), Expect = 2.400e-64 Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1 Query: 640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753 F KGGQA+RC C ADRTGH+LLHTLYG++++++T FV Sbjct: 177 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFV 214
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_XENTR (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Xenopus tropicalis GN=sdha PE=2 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 4.080e-64 Identity = 99/146 (67.81%), Postives = 108/146 (73.97%), Query Frame = 2 Query: 221 RSHFSRLFSTNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658 R S S + + Y +VDH +D LSE GFNTACITKLFPTRSHTVAAQGGINAALGNM +DDWRWH YDTVKGSDWLGDQDAI YM +AP +VIELENYG+PFSRTE GKIYQRAFGGQSL FGK G+ Sbjct: 43 RKDTSAKLSDSISTQYPVVDHDFDAVVVGAGGAGLRAAFGLSEAGFNTACITKLFPTRSHTVAAQGGINAALGNMEDDDWRWHFYDTVKGSDWLGDQDAIHYMTEQAPASVIELENYGMPFSRTEQGKIYQRAFGGQSLKFGKGGQ 188 HSP 2 Score: 62.7734 bits (151), Expect = 4.080e-64 Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1 Query: 640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753 F KGGQA+RC C ADRTGH+LLHTLYG++++++T FV Sbjct: 183 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFV 220
BLAST of FC920510 vs. ExPASy Swiss-Prot
Match: DHSA_BOVIN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Bos taurus GN=SDHA PE=1 SV=3) HSP 1 Score: 203.756 bits (517), Expect = 4.080e-64 Identity = 95/131 (72.52%), Postives = 104/131 (79.39%), Query Frame = 2 Query: 266 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKVGR 658 Y +VDH +D LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM ED+WRWH YDTVKGSDWLGDQDAI YM +AP +V+ELENYG+PFSRTEDGKIYQRAFGGQSL FGK G+ Sbjct: 56 YPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQ 186 HSP 2 Score: 62.7734 bits (151), Expect = 4.080e-64 Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1 Query: 640 FWKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQXFV 753 F KGGQA+RC C ADRTGH+LLHTLYG++++++T FV Sbjct: 181 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFV 218 The following BLAST results are available for this feature:
BLAST of FC920510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 40
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920510 ID=FC920510; Name=FC920510; organism=Citrus clementina; type=EST; length=754bpback to top |