FC920602
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920602 vs. ExPASy Swiss-Prot
Match: RPG1_ARATH (Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1 PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 8.393e-28 Identity = 67/190 (35.26%), Postives = 112/190 (58.95%), Query Frame = 3 Query: 177 MFDHHQWGVAFGILGNIISFLVYLAPVPTFYRIYRKKSTESFQSLPYLVALFSSMLWFYYAL--VKQNAFLLVTINCFGCVIETIYIILFITY-APKGSRNSTVKLFVSMNVGVFSLILLLTHF-LATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRNKSVEFMPFILSFFLTLSAIMWFAYGLFQK 734 M D Q G++GN+ISF ++ AP TF+RI++KKS E F +PY+ + + MLW +Y L V +++ L+ TIN G VIE Y+ +++ Y K + + F+++ V + I+L+T F L D + +G IC +++++ AP + +V++ KSVE+MPF+LS ++A +W Y L K Sbjct: 1 MVDAKQVRFIIGVIGNVISFGLFAAPAKTFWRIFKKKSVEEFSYVPYVATVMNCMLWVFYGLPVVHKDSILVSTINGVGLVIELFYVGVYLMYCGHKKNHRRNILGFLALEVILVVAIILITLFALKGDFVKQTFVGVICDVFNIAMYGAPSLAIIKVVKTKSVEYMPFLLSLVCFVNAGIWTTYSLIFK 190
BLAST of FC920602 vs. ExPASy Swiss-Prot
Match: R1AP1_XENLA (RAG1-activating protein 1 homolog OS=Xenopus laevis GN=rag1ap1 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14 Identity = 45/155 (29.03%), Postives = 88/155 (56.77%), Query Frame = 3 Query: 282 KKSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLL-----THFLATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRNKSVEFMPFILSFFLTLSAIMWFAYGLFQ 731 ++S E+ Q LP+L +++ WFYY +K + L++ +N G ++++Y+ ++ Y+P+ + +V V V +LLL T ++ ++R+ LG C ++S++ +PL+ +AQ+IR+KS + + F L+ L++ W YGL Q Sbjct: 32 QRSVENIQYLPFLTTDLNNLGWFYYGYLKGDGTLMI-VNVIGASLQSLYMGAYLLYSPE-------RRYVGSQVLVSLGVLLLGYCYFTLWILDLNSRLNQLGLFCSVFTISMYLSPLADLAQIIRSKSTKCLSFPLTVATFLTSSSWVLYGLVQ 178
BLAST of FC920602 vs. ExPASy Swiss-Prot
Match: R1AP1_XENTR (RAG1-activating protein 1 homolog OS=Xenopus tropicalis GN=rag1ap1 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13 Identity = 44/150 (29.33%), Postives = 85/150 (56.67%), Query Frame = 3 Query: 282 KKSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHFLATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRNKSVEFMPFILSFFLTLSAIMWFAYGLFQ 731 K+S E+ Q LP+L +++ WFYY +K + L++ +N G ++T+Y+ +I Y+ + R ++ VS+ V +F T + ++R+ LG C ++S++ +PL+ +AQ+I++KS + + F L+ L++ W YG Q Sbjct: 32 KRSVENIQFLPFLTTDLNNLGWFYYGYLKGDGTLII-VNLIGASLQTLYMAAYILYSLE-RRYVVSQVLVSLGV-LFLAHCYFTLWTPDINSRLNQLGLFCSIFTISMYLSPLADLAQIIKSKSTKCLSFPLTVATFLTSTSWVLYGWVQ 178
BLAST of FC920602 vs. ExPASy Swiss-Prot
Match: R1AP1_PAPAN (RAG1-activating protein 1 OS=Papio anubis GN=RAG1AP1 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12 Identity = 42/149 (28.19%), Postives = 81/149 (54.36%), Query Frame = 3 Query: 285 KSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHF---LATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRNKSVEFMPFILSFFLTLSAIMWFAYG 722 +S ++ Q LP+L +++ W Y +K + L+V +N G ++T+YI+ ++ Y P R V L + +GV L+L +F + R+ +LG C ++S++ +PL+ +A+VI+ KS + + + L+ L++ W YG Sbjct: 37 RSVDNVQFLPFLTTEVNNLGWLSYGALKGDRILIV-VNTVGAALQTLYILAYLHYCP---RKRVVLLQTATLLGV--LLLGYGYFWLLVPNPEARLQLLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATVLTSASWCLYG 179
BLAST of FC920602 vs. ExPASy Swiss-Prot
Match: R1AP1_MOUSE (RAG1-activating protein 1 OS=Mus musculus GN=Rag1ap1 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.432e-12 Identity = 40/150 (26.67%), Postives = 80/150 (53.33%), Query Frame = 3 Query: 279 RKKSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPK--GSRNSTVKLFVSMNVGVFSLILLLTHFLATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRNKSVEFMPFILSFFLTLSAIMWFAYG 722 R +S ++ Q LP+L +++ W Y ++K + L++ +N G V++T+YI+ ++ Y+P+ G T L + +G LL+ A R+ LG C ++S++ +PL+ +A++++ KS + + F L+ + W YG Sbjct: 35 RTRSVDNIQFLPFLTTDVNNLSWLSYGVLKGDGTLII-VNSVGAVLQTLYILAYLHYSPQKHGVLLQTATLLAVLLLGYGYFWLLVPDLEA----RLQQLGLFCSVFTISMYLSPLADLAKIVQTKSTQRLSFSLTIATLFCSASWSIYG 179
BLAST of FC920602 vs. ExPASy Swiss-Prot
Match: R1AP1_HUMAN (RAG1-activating protein 1 OS=Homo sapiens GN=RAG1AP1 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11 Identity = 42/149 (28.19%), Postives = 80/149 (53.69%), Query Frame = 3 Query: 285 KSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHF---LATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRNKSVEFMPFILSFFLTLSAIMWFAYG 722 +S ++ Q LP+L +++ W Y +K + L+V +N G ++T+YI+ ++ Y P R V L + +GV L+L +F + R+ LG C ++S++ +PL+ +A+VI+ KS + + + L+ L++ W YG Sbjct: 37 RSVDNVQFLPFLTTEVNNLGWLSYGALKGDGILIV-VNTVGAALQTLYILAYLHYCP---RKRVVLLQTATLLGV--LLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYG 179 The following BLAST results are available for this feature:
BLAST of FC920602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920602 ID=FC920602; Name=FC920602; organism=Citrus clementina; type=EST; length=744bpback to top |