FC920848
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920848 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.813e-36 Identity = 98/191 (51.31%), Postives = 113/191 (59.16%), Query Frame = 1 Query: 82 MAQTMLLMS-GVSTSHAGNLKRDSLVTFQTQMLRPKPF-SHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGK 648 MAQ MLLM GVST++ +LKR++L+ Q Q ++PK S+L F+PL + + K KVED K+NELFVGRVAMIGFAASLLGEGITGKGIL+QLNLETGIPIYEAEP GAIGALGDRG+FVDEP TGL AVIPPGK Sbjct: 1 MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSSSSSSTVFKTLALFKSKAKAPKKVE--------KPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEP--TTGLEKAVIPPGK 181 HSP 2 Score: 74.3294 bits (181), Expect = 6.276e-13 Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 1 Query: 385 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 609 K NELFVGR+A +GFA SL+GE ITGKG LAQLN+ETG+PI E EP AI GKF+ + +E Sbjct: 200 KSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAINP--GTGKFITDDEE 272
BLAST of FC920848 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 4.938e-34 Identity = 91/189 (48.15%), Postives = 100/189 (52.91%), Query Frame = 1 Query: 82 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGK 648 MAQTMLL + ++SLV + L+PKP S L + F + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP GAIGAL DRGKF+D+P PTGL AVIPPGK Sbjct: 1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSFFLPSLPLKYPSASASASSHFTSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKAVIPPGK 182 HSP 2 Score: 70.4774 bits (171), Expect = 9.063e-12 Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 1 Query: 385 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 609 K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP AI GKFV + +E Sbjct: 201 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFVAAINP--GTGKFVTDEEE 273
BLAST of FC920848 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 4.938e-34 Identity = 94/192 (48.96%), Postives = 102/192 (53.12%), Query Frame = 1 Query: 82 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKA 651 MAQTMLL + ++SLV + L+PKP S L PL + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP GAIGALGDRGKFVD+P PTGL AVIPPGK+ Sbjct: 1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSSTNASSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGLEKAVIPPGKS 185 HSP 2 Score: 70.0922 bits (170), Expect = 1.184e-11 Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 1 Query: 385 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 609 K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP AI GKF+ + +E Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINP--GTGKFITDEEE 275
BLAST of FC920848 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.589e-32 Identity = 91/192 (47.40%), Postives = 101/192 (52.60%), Query Frame = 1 Query: 82 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKA 651 MAQTMLL + ++SLV + L+PKP S L PL + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP GAIGALGDRG+F+D+P TGL AVIPPGK+ Sbjct: 1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSTTNFSSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGLEKAVIPPGKS 185 HSP 2 Score: 70.0922 bits (170), Expect = 1.184e-11 Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 1 Query: 385 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 609 K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP AI GKF+ + +E Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINP--GTGKFITDEEE 275
BLAST of FC920848 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 3.913e-31 Identity = 74/106 (69.81%), Postives = 76/106 (71.70%), Query Frame = 1 Query: 331 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGK 648 K KVED K NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIYEAEP GAIGALGDRGKFVD+P PTGL AVIPPGK Sbjct: 69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAVIPPGK 172 HSP 2 Score: 70.4774 bits (171), Expect = 9.063e-12 Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 1 Query: 385 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 609 K NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI + EP AI GKF+ + E Sbjct: 191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINP--GNGKFITDDGE 263 The following BLAST results are available for this feature:
BLAST of FC920848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920848 ID=FC920848; Name=FC920848; organism=Citrus clementina; type=EST; length=667bpback to top |