FC920870

Overview
NameFC920870
Unique NameFC920870
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920870 vs. ExPASy Swiss-Prot
Match: ESCA_ARATH (Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.906e-35
Identity = 78/163 (47.85%), Postives = 99/163 (60.74%), Query Frame = 1 
Query:  223 RRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRKQRGMCILSGSGCVTNVTLRQPAT---------SGSIVTLHGRFEXXXXXXXXXXXXXXXXXXXXXXYLXXXXXXXXXXXXXXXLIASGPVVIMAASFMNATFDRLPLDDDE 684
            +RPRGRP GSKNK KPPIIVTRDS NALR+H +EVS G D+ ES++ +ARR+ RG+ +L G+G V+NVTLRQP T          G +VTLHGRFE                      +L               LIAS PV++MAASF NA F+RLP++++E
Sbjct:   86 KRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPAPPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMAASFSNAVFERLPIEEEE 248
The following BLAST results are available for this feature:
BLAST of FC920870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ESCA_ARATH3.906e-3547.85Putative DNA-binding protein ESCAROLA OS=Arabidops... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32014B02EF RVDevelop1 Citrus clementina cDNA clone C32014B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920870 ID=FC920870; Name=FC920870; organism=Citrus clementina; type=EST; length=717bp
GGGAGAAGTTTTTTTTTCCATTTCGAGCAAAGAACTGAACTTGCAAGCAT
GGCCGGAGGCACAGATCTTAATGTACATTCAGTTGCGACCAAAGCTGCTG
TGGATAGAAACCAAGAACTGGATAAAGGTAATCACCAGAGACCAGGCACT
GATGCGATGCTTATGCCTCCCAAAGTAGCCAAGGCAGTGTCGCCAGTTTC
TGCAGCTGATGGGGAAACCCTTAGGAGGCCTCGTGGTAGGCCAGCTGGCT
CAAAGAACAAGCCAAAGCCGCCCATCATTGTCACCCGTGACAGTGCCAAT
GCTCTTCGGGCACATGCAATGGAGGTGAGCTCAGGCTGCGATGTAAGTGA
AAGCTTAGCTAACTTTGCAAGAAGGAAGCAACGCGGTATGTGCATATTAA
GTGGGAGTGGCTGTGTAACAAACGTCACACTGCGCCAACCAGCCACTTCT
GGGTCGATTGTGACCCTTCATGGCCGTTTTGAGATTCTATCATTGCTCGG
ATCAATCCTGCCTCCGCCTGCCCCACCGGGAATCACCGGGCTAACAATTT
ACTTGGCAGGTGCTCAGGGACAGGTTGTGGGTGGGGTTGTGGTCGGTGCA
CTGATTGCTTCGGGCCCAGTTGTTATCATGGCCGCGTCTTTCATGAATGC
TACTTTTGATCGTCTTCCATTAGATGATGATGAATTAGCTGCTGCCATGC
AGAACCAGCATTACCAA
back to top