FC920978
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920978 vs. ExPASy Swiss-Prot
Match: RL391_ARATH (60S ribosomal protein L39-1 OS=Arabidopsis thaliana GN=RPL39A PE=2 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 7.723e-24 Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 2 Query: 41 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 193 MPSHK+FMIKKKL KKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF Sbjct: 1 MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
BLAST of FC920978 vs. ExPASy Swiss-Prot
Match: RL39_ORYSJ (60S ribosomal protein L39 OS=Oryza sativa subsp. japonica GN=RPL39 PE=3 SV=2) HSP 1 Score: 108.612 bits (270), Expect = 1.009e-23 Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 2 Query: 41 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 193 MPSHKTF IKKKLAKKMRQNRPIP+WIRMRTDNTIRYNAKRRHWRRTKLGF Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
BLAST of FC920978 vs. ExPASy Swiss-Prot
Match: RL39_MAIZE (60S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.009e-23 Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 2 Query: 41 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 193 MPSHKTF IKKKLAKKMRQNRPIP+WIRMRTDNTIRYNAKRRHWRRTKLGF Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
BLAST of FC920978 vs. ExPASy Swiss-Prot
Match: RL392_ARATH (60S ribosomal protein L39-2 OS=Arabidopsis thaliana GN=RPL39B PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 2.484e-22 Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 2 Query: 41 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 193 MPSHK+FMIKKKL KKMRQNRPIP+WIR+RTDN IRYNAKRRHWRRTKLGF Sbjct: 1 MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51
BLAST of FC920978 vs. ExPASy Swiss-Prot
Match: RL39_SPOFR (60S ribosomal protein L39 OS=Spodoptera frugiperda GN=RpL39 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 4.385e-19 Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 2 Query: 41 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 187 M +HKTF+IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL Sbjct: 1 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 49
BLAST of FC920978 vs. ExPASy Swiss-Prot
Match: RL39_PLUXY (60S ribosomal protein L39 OS=Plutella xylostella GN=RpL39 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 4.385e-19 Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 2 Query: 41 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 187 M +HKTF+IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL Sbjct: 1 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 49
BLAST of FC920978 vs. ExPASy Swiss-Prot
Match: RL39_RAT (60S ribosomal protein L39 OS=Rattus norvegicus GN=Rpl39 PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 1.842e-17 Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 2 Query: 41 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 190 M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50
BLAST of FC920978 vs. ExPASy Swiss-Prot
Match: RL39_MOUSE (60S ribosomal protein L39 OS=Mus musculus GN=Rpl39 PE=2 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 1.842e-17 Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 2 Query: 41 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 190 M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50
BLAST of FC920978 vs. ExPASy Swiss-Prot
Match: RL39_ICTPU (60S ribosomal protein L39 OS=Ictalurus punctatus GN=rpl39 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.842e-17 Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 2 Query: 41 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 190 M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG Sbjct: 1 MASHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50
BLAST of FC920978 vs. ExPASy Swiss-Prot
Match: RL39_HUMAN (60S ribosomal protein L39 OS=Homo sapiens GN=RPL39 PE=2 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 1.842e-17 Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 2 Query: 41 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 190 M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50 The following BLAST results are available for this feature:
BLAST of FC920978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920978 ID=FC920978; Name=FC920978; organism=Citrus clementina; type=EST; length=413bpback to top |