FC921046
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921046 vs. ExPASy Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 9.635e-19 Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 3 Query: 75 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 227 MD+Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDI Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDI 51
BLAST of FC921046 vs. ExPASy Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 3.661e-18 Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 3 Query: 75 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 227 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF D +RFIMRNVKGPVREGD+ Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDV 50
BLAST of FC921046 vs. ExPASy Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 6.245e-18 Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 3 Query: 75 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 227 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF D +R+IMRNVKGPVREGDI Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDI 50
BLAST of FC921046 vs. ExPASy Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 4.631e-13 Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 3 Query: 87 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 227 IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+ Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDV 55
BLAST of FC921046 vs. ExPASy Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 4.631e-13 Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 3 Query: 87 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 227 IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+ Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDV 55
BLAST of FC921046 vs. ExPASy Swiss-Prot
Match: RS28_DROME (40S ribosomal protein S28 OS=Drosophila melanogaster GN=RpS28b PE=3 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 1.032e-12 Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 3 Query: 75 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 227 MD + A V+KV+GRTGS+GQ TQV+V+FL +QNR I+RNVKGPVREGDI Sbjct: 1 MDKPVVWARVMKVLGRTGSQGQCTQVKVEFLGEQNRQIIRNVKGPVREGDI 51
BLAST of FC921046 vs. ExPASy Swiss-Prot
Match: RS28_SCHPO (40S ribosomal protein S28 OS=Schizosaccharomyces pombe GN=rps28a PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 2.299e-12 Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 3 Query: 75 MDSQ---IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 227 MDS +K A V+KV+GRTGSRG VTQVRV+F+DD +R I+RNVKGPVRE DI Sbjct: 1 MDSSKVPVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDI 54
BLAST of FC921046 vs. ExPASy Swiss-Prot
Match: RS28_RAT (40S ribosomal protein S28 OS=Rattus norvegicus GN=Rps28 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 2.299e-12 Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 3 Query: 87 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 227 IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+ Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55
BLAST of FC921046 vs. ExPASy Swiss-Prot
Match: RS28_PIG (40S ribosomal protein S28 OS=Sus scrofa GN=RPS28 PE=3 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 2.299e-12 Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 3 Query: 87 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 227 IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+ Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55
BLAST of FC921046 vs. ExPASy Swiss-Prot
Match: RS28_MOUSE (40S ribosomal protein S28 OS=Mus musculus GN=Rps28 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 2.299e-12 Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 3 Query: 87 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 227 IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+ Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55 The following BLAST results are available for this feature:
BLAST of FC921046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 21
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921046 ID=FC921046; Name=FC921046; organism=Citrus clementina; type=EST; length=463bpback to top |