FC921285

Overview
NameFC921285
Unique NameFC921285
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11336 contig Ccv1_Contig11336:13..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921285 vs. ExPASy Swiss-Prot
Match: KCAB_ORYSJ (Probable voltage-gated potassium channel subunit beta OS=Oryza sativa subsp. japonica GN=KOB1 PE=1 SV=2)

HSP 1 Score: 386.341 bits (991), Expect = 8.453e-107
Identity = 178/211 (84.36%), Postives = 198/211 (93.84%), Query Frame = 2
Query:   83 MQYRHLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNVLSRHKGEAEYLPLYSNYGIXLTTWSPLA 715
            MQY++LGRSGLRVSQL+YGAWV+FGNQLDVKEAK+LLQ CRD GVNFFDNAEVYANGRAEEIMGQA+R+LGW+RSD+VVSTK+FWGGQGPNDKGLSRKHIVEG + SLKRLDMDYVDV+YCHRPD +TP+EETVRAMN+VID G AFYWGTSEWSAQQITEAW +A RLDLVGPIVEQPEYN+ SRHK E+E+LPLYS YG+ LTTWSPLA
Sbjct:    1 MQYKNLGRSGLRVSQLSYGAWVTFGNQLDVKEAKALLQACRDAGVNFFDNAEVYANGRAEEIMGQAMRDLGWRRSDVVVSTKLFWGGQGPNDKGLSRKHIVEGLRGSLKRLDMDYVDVVYCHRPDATTPVEETVRAMNWVIDHGMAFYWGTSEWSAQQITEAWSVANRLDLVGPIVEQPEYNLFSRHKVESEFLPLYSTYGLGLTTWSPLA 211          
BLAST of FC921285 vs. ExPASy Swiss-Prot
Match: KCAB2_XENLA (Voltage-gated potassium channel subunit beta-2 OS=Xenopus laevis GN=kcnab2 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.128e-65
Identity = 111/209 (53.11%), Postives = 155/209 (74.16%), Query Frame = 2
Query:   89 YRHLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNVLSRHKGEAEYLPLYSNYGIXLTTWSPLA 715
            YR+LG+SGLRVS L  G WV+FG Q+  + A+ L+    D+G+N FD AEVYA G+AE ++G  I++ GW+RS +V++TKIFWGG+   ++GLSRKHI+EG KASL+RL +DYVDV++ +RPD +TP+EETVRAM +VI++G A YWGTS WS+ +I EA+ +A + +L+ PI EQ EY++  R K E +   L+   G+   TWSPLA
Sbjct:   39 YRNLGKSGLRVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLDYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLA 247          
BLAST of FC921285 vs. ExPASy Swiss-Prot
Match: KCAB2_BOVIN (Voltage-gated potassium channel subunit beta-2 OS=Bos taurus GN=KCNAB2 PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.783e-64
Identity = 110/209 (52.63%), Postives = 155/209 (74.16%), Query Frame = 2
Query:   89 YRHLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNVLSRHKGEAEYLPLYSNYGIXLTTWSPLA 715
            YR+LG+SGLRVS L  G WV+FG Q+  + A+ L+    D+G+N FD AEVYA G+AE ++G  I++ GW+RS +V++TKIFWGG+   ++GLSRKHI+EG KASL+RL ++YVDV++ +RPD +TP+EETVRAM +VI++G A YWGTS WS+ +I EA+ +A + +L+ PI EQ EY++  R K E +   L+   G+   TWSPLA
Sbjct:   39 YRNLGKSGLRVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLA 247          
BLAST of FC921285 vs. ExPASy Swiss-Prot
Match: KCAB2_RAT (Voltage-gated potassium channel subunit beta-2 OS=Rattus norvegicus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.329e-64
Identity = 110/209 (52.63%), Postives = 155/209 (74.16%), Query Frame = 2
Query:   89 YRHLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNVLSRHKGEAEYLPLYSNYGIXLTTWSPLA 715
            YR+LG+SGLRVS L  G WV+FG Q+  + A+ L+    D+G+N FD AEVYA G+AE ++G  I++ GW+RS +V++TKIFWGG+   ++GLSRKHI+EG KASL+RL ++YVDV++ +RPD +TP+EETVRAM +VI++G A YWGTS WS+ +I EA+ +A + +L+ PI EQ EY++  R K E +   L+   G+   TWSPLA
Sbjct:   39 YRNLGKSGLRVSCLGLGTWVTFGGQITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLA 247          
BLAST of FC921285 vs. ExPASy Swiss-Prot
Match: KCAB2_MOUSE (Voltage-gated potassium channel subunit beta-2 OS=Mus musculus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.329e-64
Identity = 110/209 (52.63%), Postives = 155/209 (74.16%), Query Frame = 2
Query:   89 YRHLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNVLSRHKGEAEYLPLYSNYGIXLTTWSPLA 715
            YR+LG+SGLRVS L  G WV+FG Q+  + A+ L+    D+G+N FD AEVYA G+AE ++G  I++ GW+RS +V++TKIFWGG+   ++GLSRKHI+EG KASL+RL ++YVDV++ +RPD +TP+EETVRAM +VI++G A YWGTS WS+ +I EA+ +A + +L+ PI EQ EY++  R K E +   L+   G+   TWSPLA
Sbjct:   39 YRNLGKSGLRVSCLGLGTWVTFGGQITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLA 247          
BLAST of FC921285 vs. ExPASy Swiss-Prot
Match: KCAB2_HUMAN (Voltage-gated potassium channel subunit beta-2 OS=Homo sapiens GN=KCNAB2 PE=1 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 3.972e-64
Identity = 110/209 (52.63%), Postives = 154/209 (73.68%), Query Frame = 2
Query:   89 YRHLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNVLSRHKGEAEYLPLYSNYGIXLTTWSPLA 715
            YR+LG+SGLRVS L  G WV+FG Q+  + A+ L+    D+G+N FD AEVYA G+AE ++G  I++ GW+RS +V++TKIFWGG+   ++GLSRKHI+EG KASL+RL ++YVDV++ +RPD +TP+EETVRAM +VI++G A YWGTS WS+ +I EA+ +A + +L  PI EQ EY++  R K E +   L+   G+   TWSPLA
Sbjct:   39 YRNLGKSGLRVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLA 247          
BLAST of FC921285 vs. ExPASy Swiss-Prot
Match: KCAB1_CHICK (Voltage-gated potassium channel subunit beta-1 OS=Gallus gallus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 8.849e-64
Identity = 108/211 (51.18%), Postives = 155/211 (73.46%), Query Frame = 2
Query:   83 MQYRHLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNVLSRHKGEAEYLPLYSNYGIXLTTWSPLA 715
            M+YR+LG+SGLRVS L  G WV+FG Q+  + A+ L+    + GVN FD AEVYA G+AE I+G  +++ GW+RS +V++TK++WGG+   ++GLSRKHI+EG +ASL+RL ++YVDV++ +RPD +TP+EE VRAM +VI++G A YWGTS WSA +I EA+ +A + +L+ P+ EQ EY++  R K E +   LY   G+   TWSPLA
Sbjct:   71 MKYRNLGKSGLRVSCLGLGTWVTFGGQISDEVAEQLMTIAYESGVNLFDTAEVYAAGKAEVILGNILKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLRASLQRLQLEYVDVVFANRPDNNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNLIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLA 281          
BLAST of FC921285 vs. ExPASy Swiss-Prot
Match: KCAB1_RAT (Voltage-gated potassium channel subunit beta-1 OS=Rattus norvegicus GN=Kcnab1 PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.156e-63
Identity = 108/211 (51.18%), Postives = 155/211 (73.46%), Query Frame = 2
Query:   83 MQYRHLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNVLSRHKGEAEYLPLYSNYGIXLTTWSPLA 715
            M+YR+LG+SGLRVS L  G WV+FG Q+  + A+ L+    + GVN FD AEVYA G+AE I+G  I++ GW+RS +V++TK++WGG+   ++GLSRKHI+EG K SL+RL ++YVDV++ +RPD++TP+EE VRAM +VI++G A YWGTS WSA +I EA+ +A + +++ P+ EQ EY++  R K E +   LY   G+   TWSPLA
Sbjct:   71 MKYRNLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLA 281          
BLAST of FC921285 vs. ExPASy Swiss-Prot
Match: KCAB1_MOUSE (Voltage-gated potassium channel subunit beta-1 OS=Mus musculus GN=Kcnab1 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.156e-63
Identity = 108/211 (51.18%), Postives = 155/211 (73.46%), Query Frame = 2
Query:   83 MQYRHLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNVLSRHKGEAEYLPLYSNYGIXLTTWSPLA 715
            M+YR+LG+SGLRVS L  G WV+FG Q+  + A+ L+    + GVN FD AEVYA G+AE I+G  I++ GW+RS +V++TK++WGG+   ++GLSRKHI+EG K SL+RL ++YVDV++ +RPD++TP+EE VRAM +VI++G A YWGTS WSA +I EA+ +A + +++ P+ EQ EY++  R K E +   LY   G+   TWSPLA
Sbjct:   71 MKYRNLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLA 281          
BLAST of FC921285 vs. ExPASy Swiss-Prot
Match: KCAB1_BOVIN (Voltage-gated potassium channel subunit beta-1 OS=Bos taurus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.156e-63
Identity = 108/211 (51.18%), Postives = 155/211 (73.46%), Query Frame = 2
Query:   83 MQYRHLGRSGLRVSQLAYGAWVSFGNQLDVKEAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVEGTKASLKRLDMDYVDVIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAERLDLVGPIVEQPEYNVLSRHKGEAEYLPLYSNYGIXLTTWSPLA 715
            M+YR+LG+SGLRVS L  G WV+FG Q+  + A+ L+    + GVN FD AEVYA G+AE I+G  I++ GW+RS +V++TK++WGG+   ++GLSRKHI+EG K SL+RL ++YVDV++ +RPD++TP+EE VRAM +VI++G A YWGTS WSA +I EA+ +A + +++ P+ EQ EY++  R K E +   LY   G+   TWSPLA
Sbjct:   71 MKYRNLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLA 281          
The following BLAST results are available for this feature:
BLAST of FC921285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
KCAB_ORYSJ8.453e-10784.36Probable voltage-gated potassium channel subunit b... [more]
KCAB2_XENLA6.128e-6553.11Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_BOVIN1.783e-6452.63Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_RAT2.329e-6452.63Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_MOUSE2.329e-6452.63Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_HUMAN3.972e-6452.63Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB1_CHICK8.849e-6451.18Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_RAT1.156e-6351.18Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_MOUSE1.156e-6351.18Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_BOVIN1.156e-6351.18Voltage-gated potassium channel subunit beta-1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32103C03EF RVDevelopN Citrus clementina cDNA clone C32103C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921285 ID=FC921285; Name=FC921285; organism=Citrus clementina; type=EST; length=716bp
GACAGTTTCCAGATTTTCTCGTACACTTCCCCAACAGGCCAAAAAAACAG
ACAACAAAAAGGTTAAAAAAGGAAATTACAAAATGCAATACAGGCACCTG
GGGAGATCGGGGCTGAGAGTGAGCCAGCTCGCGTACGGAGCGTGGGTCAG
CTTCGGGAACCAGTTGGACGTGAAGGAGGCGAAGTCGCTCTTGCAATGCT
GCCGCGACCACGGCGTCAACTTCTTCGACAATGCCGAGGTCTACGCCAAC
GGCCGCGCGGAAGAGATCATGGGCCAGGCCATTCGCGAGCTCGGGTGGAA
GCGATCCGACATCGTCGTTTCCACCAAGATCTTTTGGGGCGGCCAGGGCC
CCAACGATAAAGGCCTCTCCAGAAAACACATTGTCGAGGGCACCAAAGCT
TCCTTGAAACGCCTCGACATGGATTACGTCGACGTTATTTATTGTCACAG
GCCGGACACGTCGACACCGATAGAGGAGACGGTGAGGGCGATGAATTATG
TGATTGATAAGGGGTGGGCGTTTTACTGGGGAACAAGTGAGTGGTCGGCG
CAGCAGATCACCGAGGCTTGGGGGATTGCTGAGCGCTTGGATTTGGTGGG
CCCCATTGTTGAGCAACCAGAGTATAACGTGTTGTCTAGGCACAAGGGTG
AAGCTGAGTACCTCCCTCTATACTCCAATTATGGCATANGTCTTACCACA
TGGAGTCCACTTGCAT
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