FC921347

Overview
NameFC921347
Unique NameFC921347
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921347_ssr95 microsatellite FC921347_ssr95:95..106. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14327 contig Ccv1_Contig14327:19..747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDA5_ARATH (Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 8.510e-78
Identity = 139/194 (71.65%), Postives = 168/194 (86.60%), Query Frame = 2
Query:  143 KRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQRCSGXIPCPIF 724
            +R+VGL+YDE MCKH+TPDG+ HPE P+RI+ IW KLQ AG+ +RCVVL S +A+DK+L  VHT++HVNL+K+IS+KQ D RR+RIAS+LNSIYLN GSSEAAYLAAGSV+++AE+VAEGEL+  FAIVRPPGHHAE DEAMGFCL+NNVAVAASFLLNERP+LG+K ILIVDWDVHHGN TQ+     P  +F
Sbjct:   24 QRKVGLIYDETMCKHDTPDGEDHPECPDRIRVIWEKLQLAGVSQRCVVLGSSKAEDKHLQLVHTKDHVNLVKSISTKQKDYRRNRIASQLNSIYLNGGSSEAAYLAAGSVVKLAEKVAEGELDCGFAIVRPPGHHAEADEAMGFCLFNNVAVAASFLLNERPDLGVKKILIVDWDVHHGNGTQKMFWKDPRVLF 217          
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDA18_ARATH (Histone deacetylase 18 OS=Arabidopsis thaliana GN=HDA18 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 6.311e-73
Identity = 130/184 (70.65%), Postives = 160/184 (86.96%), Query Frame = 2
Query:  143 KRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQR 694
            +R+VGL+YDE MCKH+TP+G    E P+RI+ IW KLQ AG+ +RCVVL   +A+DK+L  VHT+ HVNL+K+IS+K+ DSRR++IAS+L+SIYLN GSSEAAYLAAGSV++VAE+VAEGEL+  FAIVRPPGHHAE DEAMGFCL+NNVAVAASFLLNERP+L +K ILIVDWD+HHGN TQ+
Sbjct:   57 QRKVGLVYDETMCKHDTPNGKVDVECPDRIRVIWEKLQLAGVTQRCVVLGGSKAEDKHLKLVHTKKHVNLVKSISTKKKDSRRNKIASQLDSIYLNGGSSEAAYLAAGSVVKVAEKVAEGELDCGFAIVRPPGHHAESDEAMGFCLFNNVAVAASFLLNERPDLDVKKILIVDWDIHHGNGTQK 240          
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDAC4_MOUSE (Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.287e-33
Identity = 81/193 (41.97%), Postives = 115/193 (59.59%), Query Frame = 2
Query:  155 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRRDRIASKL---------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQR 694
            GL+YD  M KH    G+   HPE+  RI++IW++LQ  G+  +C  +  ++A  + L +VH+E H  L     ++ ++ DS    +  +L         ++I+    SS AA LA G V+E+  +VA GEL + FA+VRPPGHHAE    MGFC +N+VAVAA  L   +  L +  ILIVDWDVHHGN TQ+
Sbjct:  652 GLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSSLTSVFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLL---QQRLNVSKILIVDWDVHHGNGTQQ 841          
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDAC4_RAT (Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac4 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.680e-33
Identity = 80/193 (41.45%), Postives = 115/193 (59.59%), Query Frame = 2
Query:  155 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRRDRIASKL---------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQR 694
            GL+YD  M KH    G+   HPE+  RI++IW++LQ  G+  +C  +  ++A  + L +VH+E H  L     ++ ++ DS    +  +L         ++I+    SS AA LA G V+E+  +VA GEL + FA+VRPPGHHAE    MGFC +N+VA+AA  L   +  L +  ILIVDWDVHHGN TQ+
Sbjct:  653 GLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSSLTSVFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAKLL---QQRLNVSKILIVDWDVHHGNGTQQ 842          
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDAC4_CHICK (Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.889e-33
Identity = 83/200 (41.50%), Postives = 118/200 (59.00%), Query Frame = 2
Query:  155 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRRDRIASKLNSIYL---------------NE-GSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQR 694
            GL+YD  M KH    G+   HPE+  RI++IW++LQ  G+  +C  +  ++A  + L +VH+E H  L     ++ ++ DS++  +   L S+++               NE  SS AA LA G VIE+  +VA GEL + FA+VRPPGHHAE    MGFC +N+VA+AA  L   +  L +  ILIVDWDVHHGN TQ+
Sbjct:  651 GLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKK--LLGSLTSMFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVIELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAKLL---QQRLNVSKILIVDWDVHHGNGTQQ 845          
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDAC7_HUMAN (Histone deacetylase 7 OS=Homo sapiens GN=HDAC7 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.422e-32
Identity = 83/206 (40.29%), Postives = 114/206 (55.34%), Query Frame = 2
Query:  134 RTIKRRVGLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKL-----------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQR 694
            RT+    GL+YD  M KH    GD   HPE+  RI++IW++LQ  G+  +C  L  ++A  + L SVH+E HV L       +      ++A  L                 ++I+    SS AA  AAGSV ++A +VA  EL + FA+VRPPGHHA+   AMGFC +N+VA+A   L   + +     ILIVDWDVHHGN TQ+
Sbjct:  514 RTLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQL---QQQSKASKILIVDWDVHHGNGTQQ 716          
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDAC4_HUMAN (Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=1 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 1.422e-32
Identity = 82/200 (41.00%), Postives = 117/200 (58.50%), Query Frame = 2
Query:  155 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRRDRIASKLNSIYL---------------NE-GSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQR 694
            GL+YD  M KH    G    HPE+  RI++IW++LQ  G+  +C  +  ++A  + L +VH+E H  L     ++ ++ DS++  +   L S+++               NE  S+ AA LA G V+E+  +VA GEL + FA+VRPPGHHAE    MGFC +N+VAVAA  L   +  L +  ILIVDWDVHHGN TQ+
Sbjct:  655 GLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKK--LLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLL---QQRLSVSKILIVDWDVHHGNGTQQ 849          
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDAC9_HUMAN (Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 7.059e-32
Identity = 81/199 (40.70%), Postives = 115/199 (57.79%), Query Frame = 2
Query:  155 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSR------RDRIASKL---------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQR 694
            G+ YD  M KH    G+   HPE+  RI++IW++LQ  G+  +C  +  ++A  + +  VH+E+H  L     +  ++ D R        +  S L         ++I+    SS AA +A G VIE+A +VA GEL + FA+VRPPGHHAE   AMGFC +N+VA+ A +L   R +L I  ILIVD DVHHGN TQ+
Sbjct:  634 GIAYDPLMLKHQCVCGNSTTHPEHAGRIQSIWSRLQETGLLNKCERIQGRKASLEEIQLVHSEHHSLLYGTNPLDGQKLDPRILLGDDSQKFFSSLPCGGLGVDSDTIWNELHSSGAARMAVGCVIELASKVASGELKNGFAVVRPPGHHAEESTAMGFCFFNSVAITAKYL---RDQLNISKILIVDLDVHHGNGTQQ 829          
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDAC5_CRIGR (Histone deacetylase 5 OS=Cricetulus griseus GN=HDAC5 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.683e-31
Identity = 74/199 (37.19%), Postives = 118/199 (59.30%), Query Frame = 2
Query:  155 GLLYDERMCKHNTPDGD--YHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRR--DRIASKL-------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQR 694
            G++YD  M KH    G+   HPE+  RI++IW++LQ  G+  +C  +  ++A    + +VH+E H  L     ++ ++ DS++    I+ K+             ++++    SS A  +A G ++E+A +VA GEL + FAI+RPPGHHAE   AMGFC +N+VA+ A  L   + +L +  +LIVDWD+HHGN TQ+
Sbjct:  673 GVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLSKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAMLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLVELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLL---QQKLNVGKVLIVDWDIHHGNGTQQ 868          
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDAC5_MOUSE (Histone deacetylase 5 OS=Mus musculus GN=Hdac5 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.504e-31
Identity = 74/199 (37.19%), Postives = 118/199 (59.30%), Query Frame = 2
Query:  155 GLLYDERMCKHNTPDGD--YHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRR--DRIASKL-------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQR 694
            G++YD  M KH    G+   HPE+  RI++IW++LQ  G+  +C  +  ++A    + +VH+E H  L     ++ ++ DS++    I+ K+             ++++    SS A  +A G ++E+A +VA GEL + FAI+RPPGHHAE   AMGFC +N+VA+ A  L   + +L +  +LIVDWD+HHGN TQ+
Sbjct:  675 GVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLGKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAMLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLVELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLL---QQKLSVGKVLIVDWDIHHGNGTQQ 870          
The following BLAST results are available for this feature:
BLAST of FC921347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
HDA5_ARATH8.510e-7871.65Histone deacetylase 5 OS=Arabidopsis thaliana GN=H... [more]
HDA18_ARATH6.311e-7370.65Histone deacetylase 18 OS=Arabidopsis thaliana GN=... [more]
HDAC4_MOUSE1.287e-3341.97Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=... [more]
HDAC4_RAT1.680e-3341.45Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac... [more]
HDAC4_CHICK4.889e-3341.50Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE... [more]
HDAC7_HUMAN1.422e-3240.29Histone deacetylase 7 OS=Homo sapiens GN=HDAC7 PE=... [more]
HDAC4_HUMAN1.422e-3241.00Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=... [more]
HDAC9_HUMAN7.059e-3240.70Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=... [more]
HDAC5_CRIGR2.683e-3137.19Histone deacetylase 5 OS=Cricetulus griseus GN=HDA... [more]
HDAC5_MOUSE3.504e-3137.19Histone deacetylase 5 OS=Mus musculus GN=Hdac5 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32103H08EF RVDevelopN Citrus clementina cDNA clone C32103H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921347 ID=FC921347; Name=FC921347; organism=Citrus clementina; type=EST; length=728bp
GAGATCGTCACTTTACTTGAGCGATCTCTCCTCTCTCTGCAGTATTCACG
TTGACGTATACATTCAAAAAATTAAGAATTACTAATTAGTGTGGCTGCCT
GCCTGCCAGTATGGAGGTGAAATCAGGTAGGGCAGGACCATAAAACGACG
CGTGGGCCTACTGTACGATGAGAGAATGTGTAAACATAACACACCTGACG
GTGATTATCACCCCGAGAACCCCAACCGCATCAAAGCTATTTGGAACAAG
CTCCAAGCCGCTGGCATTCCTCGACGGTGTGTCGTTTTAAATTCCAAAGA
AGCGAAAGACAAAAATCTACTGTCTGTGCACACGGAAAATCATGTTAATT
TGATTAAGAATATAAGCTCAAAGCAGTTTGATTCCCGAAGAGATAGGATT
GCGTCAAAATTAAATTCAATTTACTTAAATGAAGGATCATCGGAGGCTGC
TTATCTTGCTGCCGGTTCAGTTATAGAGGTCGCCGAGAGAGTTGCCGAAG
GGGAGTTGAATTCTGCTTTTGCTATTGTGAGACCTCCTGGTCATCATGCT
GAACCAGATGAAGCTATGGGATTTTGTCTATACAACAATGTGGCTGTTGC
TGCAAGTTTCCTATTAAATGAAAGACCAGAACTGGGAATCAAATAAATTT
TGATTGTTGATTGGGATGTTCACCATGGTAACAGTACTCAAAGATGTTCT
GGAANGATCCCGTGTCCTATCTTCTCTG
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