FC921347
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDA5_ARATH (Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1) HSP 1 Score: 290.041 bits (741), Expect = 8.510e-78 Identity = 139/194 (71.65%), Postives = 168/194 (86.60%), Query Frame = 2 Query: 143 KRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQRCSGXIPCPIF 724 +R+VGL+YDE MCKH+TPDG+ HPE P+RI+ IW KLQ AG+ +RCVVL S +A+DK+L VHT++HVNL+K+IS+KQ D RR+RIAS+LNSIYLN GSSEAAYLAAGSV+++AE+VAEGEL+ FAIVRPPGHHAE DEAMGFCL+NNVAVAASFLLNERP+LG+K ILIVDWDVHHGN TQ+ P +F Sbjct: 24 QRKVGLIYDETMCKHDTPDGEDHPECPDRIRVIWEKLQLAGVSQRCVVLGSSKAEDKHLQLVHTKDHVNLVKSISTKQKDYRRNRIASQLNSIYLNGGSSEAAYLAAGSVVKLAEKVAEGELDCGFAIVRPPGHHAEADEAMGFCLFNNVAVAASFLLNERPDLGVKKILIVDWDVHHGNGTQKMFWKDPRVLF 217
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDA18_ARATH (Histone deacetylase 18 OS=Arabidopsis thaliana GN=HDA18 PE=2 SV=1) HSP 1 Score: 273.863 bits (699), Expect = 6.311e-73 Identity = 130/184 (70.65%), Postives = 160/184 (86.96%), Query Frame = 2 Query: 143 KRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQR 694 +R+VGL+YDE MCKH+TP+G E P+RI+ IW KLQ AG+ +RCVVL +A+DK+L VHT+ HVNL+K+IS+K+ DSRR++IAS+L+SIYLN GSSEAAYLAAGSV++VAE+VAEGEL+ FAIVRPPGHHAE DEAMGFCL+NNVAVAASFLLNERP+L +K ILIVDWD+HHGN TQ+ Sbjct: 57 QRKVGLVYDETMCKHDTPNGKVDVECPDRIRVIWEKLQLAGVTQRCVVLGGSKAEDKHLKLVHTKKHVNLVKSISTKKKDSRRNKIASQLDSIYLNGGSSEAAYLAAGSVVKVAEKVAEGELDCGFAIVRPPGHHAESDEAMGFCLFNNVAVAASFLLNERPDLDVKKILIVDWDIHHGNGTQK 240
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDAC4_MOUSE (Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=1 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.287e-33 Identity = 81/193 (41.97%), Postives = 115/193 (59.59%), Query Frame = 2 Query: 155 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRRDRIASKL---------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQR 694 GL+YD M KH G+ HPE+ RI++IW++LQ G+ +C + ++A + L +VH+E H L ++ ++ DS + +L ++I+ SS AA LA G V+E+ +VA GEL + FA+VRPPGHHAE MGFC +N+VAVAA L + L + ILIVDWDVHHGN TQ+ Sbjct: 652 GLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSSLTSVFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLL---QQRLNVSKILIVDWDVHHGNGTQQ 841
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDAC4_RAT (Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac4 PE=1 SV=2) HSP 1 Score: 142.895 bits (359), Expect = 1.680e-33 Identity = 80/193 (41.45%), Postives = 115/193 (59.59%), Query Frame = 2 Query: 155 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRRDRIASKL---------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQR 694 GL+YD M KH G+ HPE+ RI++IW++LQ G+ +C + ++A + L +VH+E H L ++ ++ DS + +L ++I+ SS AA LA G V+E+ +VA GEL + FA+VRPPGHHAE MGFC +N+VA+AA L + L + ILIVDWDVHHGN TQ+ Sbjct: 653 GLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSSLTSVFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAKLL---QQRLNVSKILIVDWDVHHGNGTQQ 842
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDAC4_CHICK (Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 4.889e-33 Identity = 83/200 (41.50%), Postives = 118/200 (59.00%), Query Frame = 2 Query: 155 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRRDRIASKLNSIYL---------------NE-GSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQR 694 GL+YD M KH G+ HPE+ RI++IW++LQ G+ +C + ++A + L +VH+E H L ++ ++ DS++ + L S+++ NE SS AA LA G VIE+ +VA GEL + FA+VRPPGHHAE MGFC +N+VA+AA L + L + ILIVDWDVHHGN TQ+ Sbjct: 651 GLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKK--LLGSLTSMFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVIELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAKLL---QQRLNVSKILIVDWDVHHGNGTQQ 845
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDAC7_HUMAN (Histone deacetylase 7 OS=Homo sapiens GN=HDAC7 PE=1 SV=2) HSP 1 Score: 139.813 bits (351), Expect = 1.422e-32 Identity = 83/206 (40.29%), Postives = 114/206 (55.34%), Query Frame = 2 Query: 134 RTIKRRVGLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKL-----------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQR 694 RT+ GL+YD M KH GD HPE+ RI++IW++LQ G+ +C L ++A + L SVH+E HV L + ++A L ++I+ SS AA AAGSV ++A +VA EL + FA+VRPPGHHA+ AMGFC +N+VA+A L + + ILIVDWDVHHGN TQ+ Sbjct: 514 RTLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQL---QQQSKASKILIVDWDVHHGNGTQQ 716
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDAC4_HUMAN (Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=1 SV=3) HSP 1 Score: 139.813 bits (351), Expect = 1.422e-32 Identity = 82/200 (41.00%), Postives = 117/200 (58.50%), Query Frame = 2 Query: 155 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRRDRIASKLNSIYL---------------NE-GSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQR 694 GL+YD M KH G HPE+ RI++IW++LQ G+ +C + ++A + L +VH+E H L ++ ++ DS++ + L S+++ NE S+ AA LA G V+E+ +VA GEL + FA+VRPPGHHAE MGFC +N+VAVAA L + L + ILIVDWDVHHGN TQ+ Sbjct: 655 GLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKK--LLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLL---QQRLSVSKILIVDWDVHHGNGTQQ 849
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDAC9_HUMAN (Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=1 SV=2) HSP 1 Score: 137.502 bits (345), Expect = 7.059e-32 Identity = 81/199 (40.70%), Postives = 115/199 (57.79%), Query Frame = 2 Query: 155 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSR------RDRIASKL---------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQR 694 G+ YD M KH G+ HPE+ RI++IW++LQ G+ +C + ++A + + VH+E+H L + ++ D R + S L ++I+ SS AA +A G VIE+A +VA GEL + FA+VRPPGHHAE AMGFC +N+VA+ A +L R +L I ILIVD DVHHGN TQ+ Sbjct: 634 GIAYDPLMLKHQCVCGNSTTHPEHAGRIQSIWSRLQETGLLNKCERIQGRKASLEEIQLVHSEHHSLLYGTNPLDGQKLDPRILLGDDSQKFFSSLPCGGLGVDSDTIWNELHSSGAARMAVGCVIELASKVASGELKNGFAVVRPPGHHAEESTAMGFCFFNSVAITAKYL---RDQLNISKILIVDLDVHHGNGTQQ 829
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDAC5_CRIGR (Histone deacetylase 5 OS=Cricetulus griseus GN=HDAC5 PE=2 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.683e-31 Identity = 74/199 (37.19%), Postives = 118/199 (59.30%), Query Frame = 2 Query: 155 GLLYDERMCKHNTPDGD--YHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRR--DRIASKL-------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQR 694 G++YD M KH G+ HPE+ RI++IW++LQ G+ +C + ++A + +VH+E H L ++ ++ DS++ I+ K+ ++++ SS A +A G ++E+A +VA GEL + FAI+RPPGHHAE AMGFC +N+VA+ A L + +L + +LIVDWD+HHGN TQ+ Sbjct: 673 GVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLSKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAMLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLVELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLL---QQKLNVGKVLIVDWDIHHGNGTQQ 868
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDAC5_MOUSE (Histone deacetylase 5 OS=Mus musculus GN=Hdac5 PE=1 SV=2) HSP 1 Score: 135.191 bits (339), Expect = 3.504e-31 Identity = 74/199 (37.19%), Postives = 118/199 (59.30%), Query Frame = 2 Query: 155 GLLYDERMCKHNTPDGD--YHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRR--DRIASKL-------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQR 694 G++YD M KH G+ HPE+ RI++IW++LQ G+ +C + ++A + +VH+E H L ++ ++ DS++ I+ K+ ++++ SS A +A G ++E+A +VA GEL + FAI+RPPGHHAE AMGFC +N+VA+ A L + +L + +LIVDWD+HHGN TQ+ Sbjct: 675 GVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLGKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAMLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLVELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLL---QQKLSVGKVLIVDWDIHHGNGTQQ 870 The following BLAST results are available for this feature:
BLAST of FC921347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 37
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921347 ID=FC921347; Name=FC921347; organism=Citrus clementina; type=EST; length=728bpback to top |