FC921355

Overview
NameFC921355
Unique NameFC921355
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4270 contig Ccv1_Contig4270:22..674. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921355 vs. ExPASy Swiss-Prot
Match: CTPA_SYNY3 (Carboxyl-terminal-processing protease OS=Synechocystis sp. (strain PCC 6803) GN=ctpA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.930e-17
Identity = 43/84 (51.19%), Postives = 61/84 (72.62%), Query Frame = 3 
Query:  402 LVTSTTIALSETPS-LALSEENRLFLEAWRTIDRAYVDKTFNGQSWFRYRENALRNEPMNTREETYLAIRKMLATLDDPFTRLL 650
            L+    I L  TPS LA +EE +L L++WR ++++Y+D+TFN Q+W+  RE  ++  P+  REETY AI +MLATLD+PFTRLL
Sbjct:   15 LLMGALIYLGNTPSALAFTEEQKLLLQSWRLVNQSYLDETFNHQNWWLLREKYVK-RPLRNREETYTAIEEMLATLDEPFTRLL 97
[Close]
BLAST of FC921355 vs. ExPASy Swiss-Prot
Match: CTPA_SYNP2 (Carboxyl-terminal-processing protease OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ctpA PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 9.367e-14
Identity = 35/70 (50.00%), Postives = 52/70 (74.29%), Query Frame = 3 
Query:  441 SLALSEENRLFLEAWRTIDRAYVDKTFNGQSWFRYRENALRNEPMNTREETYLAIRKMLATLDDPFTRLL 650
            ++A ++E  L L+AWR + +AYVD+TFN Q+W+  R+  L+  P+ TR+E Y A+ +MLA LDDP+TRLL
Sbjct:   27 AIAFTDEQDLLLQAWRYVSQAYVDETFNHQNWWLIRQKFLK-RPLKTRDEAYEAVGEMLALLDDPYTRLL 95
The following BLAST results are available for this feature:
BLAST of FC921355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CTPA_SYNY36.930e-1751.19Carboxyl-terminal-processing protease OS=Synechocy... [more]
CTPA_SYNP29.367e-1450.00Carboxyl-terminal-processing protease OS=Synechoco... [more]
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Properties
Property NameValue
Genbank descriptionC32104A04EF RVDevelopN Citrus clementina cDNA clone C32104A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921355 ID=FC921355; Name=FC921355; organism=Citrus clementina; type=EST; length=654bp
GAGCTGAAATTTGTGGGGCTCTCTCTTCATGGAGCTCCTCACTGCAAGCT
CTGCTACATTTTCTCCTCTACCTTCTAATTTCCCCAGTTTCACATTTAAA
GCCACTATTTCCAAGTCATGGAAATCTCACCCGGGGATTGTAGAAGCTCG
ACTACAGGGTTTCTTGTTGCGTACAAGGACAACTATAAGTAAAAGACTCG
GAATTTGTTGTAATTCTGTTGGACCGTTTAAAGAGGAATTCTTGTTTCAG
CACTTTTGCCAGCTGAACAAGGGCTTTTCTTCTCAGTGTGGACTGATTTC
TATCAGATATAGGAGCAGCCTCTTGAAAGTGAGAAGTTGTTCGGACAGAA
TCAGGCAATGTGTTTCTGTTCTTTTTTGTCCAGTTGGTTTTTACTGCGAT
GCTTGTGACGTCAACTACTATTGCTCTTAGTGAGACTCCATCTTTGGCCC
TCAGCGAAGAAAATCGCCTCTTCTTAGAGGCATGGAGAACAATTGATCGT
GCGTATGTTGACAAAACTTTCAATGGTCAAAGTTGGTTTCGGTACAGAGA
AAATGCACTGCGAAATGAGCCAATGAACACCCGTGAAGAGACATACCTGG
CCATAAGAAAGATGCTTGCCACATTGGATGATCCTTTCACAAGGCTTCTG
GAGC
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