FC921387

Overview
NameFC921387
Unique NameFC921387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921387 vs. ExPASy Swiss-Prot
Match: UBP21_ARATH (Ubiquitin carboxyl-terminal hydrolase 21 OS=Arabidopsis thaliana GN=UBP21 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 55/93 (59.14%), Postives = 69/93 (74.19%), Query Frame = 2
Query:  374 WPIQIKPTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYISSFF 652
            W  +I+PTGVGAGL N GNTCFI ++LQCFTHT+PL+ +LRSF +  PC+   E FCV+ ALRDHIEL+L SSG  ++  +  DNL Y SS F
Sbjct:  152 WYPRIEPTGVGAGLYNSGNTCFIASVLQCFTHTVPLIDSLRSFMYGNPCNCGNEKFCVMQALRDHIELALRSSGYGINIDRFRDNLTYFSSDF 244          
BLAST of FC921387 vs. ExPASy Swiss-Prot
Match: UBP20_ARATH (Ubiquitin carboxyl-terminal hydrolase 20 OS=Arabidopsis thaliana GN=UBP20 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.622e-22
Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = 2
Query:  395 TGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYISSFFQ 655
            TGVGAGL NLGN+CF+N++ QCFTHT+PL+++L SF +  PC    E FCVI A+R HIE +L      ++P    DNLNY S  FQ
Sbjct:  172 TGVGAGLWNLGNSCFLNSVFQCFTHTVPLIESLLSFRYEVPCHCGNEFFCVIRAIRYHIEAALRPERCPIAPYFFFDNLNYFSPDFQ 258          

HSP 2 Score: 28.4906 bits (62), Expect = 1.622e-22
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  649 FSRYQQEDAHEF 684
            F RYQQEDAHEF
Sbjct:  257 FQRYQQEDAHEF 268          
BLAST of FC921387 vs. ExPASy Swiss-Prot
Match: UBP23_ARATH (Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana GN=UBP23 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 44/105 (41.90%), Postives = 65/105 (61.90%), Query Frame = 2
Query:  341 SSLLSRPVEKHWPIQIKPTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYISSFFQ 655
            S LL    E      I    +GAGL+NLGNTCF+N++LQC T+T PL   L++  H + C  A  GFC +CA++ H+  +  ++G++L+P+ LV NL  IS  F+
Sbjct:   85 SDLLEHGFEPDLTFSITFRKIGAGLQNLGNTCFLNSVLQCLTYTEPLAATLQTAAHQKYCHVA--GFCALCAIQKHVRTARQANGRILAPKDLVSNLRCISRNFR 187          
BLAST of FC921387 vs. ExPASy Swiss-Prot
Match: UBP42_HUMAN (Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 37/85 (43.53%), Postives = 56/85 (65.88%), Query Frame = 2
Query:  401 VGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYISSFFQ 655
            VGAGL+NLGNTCF NA LQC T+T PL   + S +H + C    EGFC++C ++ HI  +L++ G V+ P  +++ +  I+  F+
Sbjct:  109 VGAGLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCH--AEGFCMMCTMQAHITQALSNPGDVIKPMFVINEMRRIARHFR 191          
BLAST of FC921387 vs. ExPASy Swiss-Prot
Match: UBP36_HUMAN (Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo sapiens GN=USP36 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 2
Query:  401 VGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYISSFFQ 655
            VGAGL NLGNTCF+NA +QC T+T PL   L S +H R C   +  FC++C +++HI  + A+SG  + P   + +L  I+  F+
Sbjct:  120 VGAGLHNLGNTCFLNATIQCLTYTPPLANYLLSKEHARSCHQGS--FCMLCVMQNHIVQAFANSGNAIKPVSFIRDLKKIARHFR 202          
BLAST of FC921387 vs. ExPASy Swiss-Prot
Match: UBP36_MOUSE (Ubiquitin carboxyl-terminal hydrolase 36 OS=Mus musculus GN=Usp36 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 2
Query:  401 VGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYISSFFQ 655
            VGAGL NLGNTCF+N+ +QC T+T PL   L S +H R C     GFC++C +++H+  + A+SG  + P   + +L  I+  F+
Sbjct:  120 VGAGLHNLGNTCFLNSTIQCLTYTPPLANYLLSKEHARSCHQG--GFCMLCLMQNHMVQAFANSGNAIKPVSFIRDLKKIARHFR 202          
BLAST of FC921387 vs. ExPASy Swiss-Prot
Match: U17L8_HUMAN (Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 8 OS=Homo sapiens GN=USP17L8 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.026e-12
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 2
Query:  389 KPTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSP 610
            +P  VGAGL+N+GNTC++NA LQC T+T PL   + S +H + C       C++C ++ HI  +L S G V+ P
Sbjct:   74 RPAAVGAGLQNMGNTCYLNASLQCLTYTPPLANYMLSREHSQTCQ--RPKCCMLCTMQAHITWALHSPGHVIQP 145          

HSP 2 Score: 22.7126 bits (47), Expect = 1.026e-12
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  649 FSRYQQEDAHEF 684
            F R +QEDAHEF
Sbjct:  153 FHRGKQEDAHEF 164          
BLAST of FC921387 vs. ExPASy Swiss-Prot
Match: U17L4_HUMAN (Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 4 OS=Homo sapiens GN=USP17L4 PE=3 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.730e-12
Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = 2
Query:  389 KPTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSP 610
            +P  VGAGL+N+GNTC+ NA LQC T+TLPL   + S +H + C       C++C ++ HI  +L S G V+ P
Sbjct:   74 RPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQ--RPKCCMLCTMQAHITWALHSPGHVIQP 145          

HSP 2 Score: 21.1718 bits (43), Expect = 1.730e-12
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  649 FSRYQQEDAHEF 684
            F R +QED HEF
Sbjct:  153 FHRGKQEDVHEF 164          
BLAST of FC921387 vs. ExPASy Swiss-Prot
Match: U17L3_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17-like protein 3 OS=Homo sapiens GN=USP17L3 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.730e-12
Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = 2
Query:  389 KPTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSP 610
            +P  VGAGL+N+GNTC+ NA LQC T+TLPL   + S +H + C       C++C ++ HI  +L S G V+ P
Sbjct:   74 RPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQ--RPKCCMLCTMQAHITWALHSPGHVIQP 145          

HSP 2 Score: 21.1718 bits (43), Expect = 1.730e-12
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  649 FSRYQQEDAHEF 684
            F R +QED HEF
Sbjct:  153 FHRGKQEDVHEF 164          
BLAST of FC921387 vs. ExPASy Swiss-Prot
Match: U17L1_HUMAN (Putative ubiquitin carboxyl-terminal hydrolase 17-like protein 1 OS=Homo sapiens GN=USP17L1P PE=5 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.730e-12
Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = 2
Query:  389 KPTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSP 610
            +P  VGAGL+N+GNTC+ NA LQC T+TLPL   + S +H + C       C++C ++ HI  +L S G V+ P
Sbjct:   74 RPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQ--RPKCCMLCTMQAHITWALHSPGHVIQP 145          

HSP 2 Score: 21.1718 bits (43), Expect = 1.730e-12
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  649 FSRYQQEDAHEF 684
            F R +QED HEF
Sbjct:  153 FHRGKQEDVHEF 164          
The following BLAST results are available for this feature:
BLAST of FC921387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
UBP21_ARATH6.125e-2559.14Ubiquitin carboxyl-terminal hydrolase 21 OS=Arabid... [more]
UBP20_ARATH1.622e-2254.02Ubiquitin carboxyl-terminal hydrolase 20 OS=Arabid... [more]
UBP23_ARATH7.253e-1841.90Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabid... [more]
UBP42_HUMAN2.580e-1543.53Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo s... [more]
UBP36_HUMAN1.280e-1443.53Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo s... [more]
UBP36_MOUSE2.184e-1442.35Ubiquitin carboxyl-terminal hydrolase 36 OS=Mus mu... [more]
U17L8_HUMAN1.026e-1243.24Inactive ubiquitin carboxyl-terminal hydrolase 17-... [more]
U17L4_HUMAN1.730e-1244.59Inactive ubiquitin carboxyl-terminal hydrolase 17-... [more]
U17L3_HUMAN1.730e-1244.59Ubiquitin carboxyl-terminal hydrolase 17-like prot... [more]
U17L1_HUMAN1.730e-1244.59Putative ubiquitin carboxyl-terminal hydrolase 17-... [more]

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Properties
Property NameValue
Genbank descriptionC32104D05EF RVDevelopN Citrus clementina cDNA clone C32104D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921387 ID=FC921387; Name=FC921387; organism=Citrus clementina; type=EST; length=707bp
GAACACAACAAAGACTCCCCAAAATTCAGATCCAACCCACAAAATCAAAT
ATTGCAAAAGACAACCGATCGATTACAATATTCTAATGGAGACCAACACC
TCCAAAACCCTAGATGACGAAACTGACCTTGTTTTTGCTCGCGAAATTGT
TGATGAAAAAACCCTAGATCCATCTTGGTCTTCACCCGAAACCCTATATG
ACCATCTCCATCCTTCAAATCACCCACTGACATTGACTGATCTCGATAAA
GATCAAAACAATGACGACGATGATGACTACGAAGAAATTTATAGGGATAC
GAGGCCTATCAGCAGTTCGTACGGACGATATAATTGGGGATCATCCTTGC
TCTCCCGCCCCGTGGAGAAGCACTGGCCTATTCAAATTAAACCTACTGGA
GTGGGTGCGGGGCTGGAGAATTTAGGAAACACATGCTTTATAAATGCTAT
TTTGCAATGCTTTACTCATACTCTGCCCCTTGTTCAAGCTCTTCGTTCTT
TTGATCATCCCAGGCCCTGCGATGGTGCTACTGAAGGGTTCTGTGTTATC
TGTGCTCTTAGAGATCACATTGAACTATCATTAGCTTCTTCAGGAAAAGT
TCTCTCTCCACGGAAACTTGTTGACAATTTGAACTATATTTCATCATTTT
TTCAAGGTATCAGCAAGAAGATGCTCATGAATTCCCCTGCATGCTGNTAG
ATAGACT
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