FC921462

Overview
NameFC921462
Unique NameFC921462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921462 vs. ExPASy Swiss-Prot
Match: PSF1_DICDI (Probable DNA replication complex GINS protein PSF1 OS=Dictyostelium discoideum GN=gins1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.408e-18
Identity = 63/185 (34.05%), Postives = 98/185 (52.97%), Query Frame = 3
Query:  162 MHGRLGSRLVKELASGEKGQLTHFNDELLNEVIKECSENFLAL-QSLIRKMQEEGLDFQTTRNADHYGALINHLSLIRNKRCLMAYVYNRAEMIQNLAWTVGLRLFELPEEIQEKLSHLEKDYFKRHSAALESYMSKVDLNLN-DMVPPKDPYIKVRVLDDLGEGIVVSDKAANFARHSMHFLKR 710
            M  +    L+KEL   +   + H+ND  +   I E     +AL + LI+ + E     +      H  A+  H S+ R+KRC++AY+  R   I+   W+ G  L  LP++++E+LS  E  +F  +   L  Y SKV L+L  D  PPK+ YI+VRV+ +LGE ++ S    N   ++ HFLKR
Sbjct:    1 MFTKTAIELIKELRGTDS--IPHYNDTSIKATIDE----MIALYEDLIKTITEHKEQKKEPFYLQH--AITFHNSINRDKRCILAYLNERLNRIKEYRWSSGQSL--LPDQLKERLSQNEIQFFSEYDKILTEYNSKVGLDLTIDPQPPKELYIEVRVIKELGEVVLNSGCTVNLNLNTTHFLKR 175          
BLAST of FC921462 vs. ExPASy Swiss-Prot
Match: PSF1_BOVIN (DNA replication complex GINS protein PSF1 OS=Bos taurus GN=GINS1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.365e-17
Identity = 60/181 (33.15%), Postives = 97/181 (53.59%), Query Frame = 3
Query:  186 LVKELASGEKGQLTHFNDELLNEVIKECSENFLALQSLIRKMQEEGLDFQTTRNADHYGAL-INHLSLIRNKRCLMAYVYNRAEMIQNLAWTVGLRLFELPEEIQEKLSHLEKDYFKRHSAALESYMSKV--DLNLN---DMVPPKDPYIKVRVLDDLGEGIVVSDKAANFARHSMHFLKR 710
            LV+EL    +G+L  FN++ L +V++E       +++L  + Q +  + +++   D    +   H SL+RN+RC +AY+Y+R   I+ L W  G     LP  ++  +S  E D+F R+  +L +YM  +  D  L+   DM PPK  YI+VR L D GE  V    +    ++S HFL R
Sbjct:    9 LVRELHRAAEGRLPAFNEDGLRQVLEE-------MKALYEQNQSDVNEAKSSGRGDLIPTIKFRHCSLLRNQRCTVAYLYDRLLRIRALRWEYG---SVLPSALRFHMSAEEMDWFNRYKKSLATYMRSLGGDEGLDITQDMKPPKSLYIEVRCLKDYGEFEVEDGTSVLLKKNSQHFLPR 179          
BLAST of FC921462 vs. ExPASy Swiss-Prot
Match: PSF1_HUMAN (DNA replication complex GINS protein PSF1 OS=Homo sapiens GN=GINS1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.200e-15
Identity = 57/181 (31.49%), Postives = 96/181 (53.04%), Query Frame = 3
Query:  186 LVKELASGEKGQLTHFNDELLNEVIKECSENFLALQSLIRKMQEEGLDFQTTRNADHYGAL-INHLSLIRNKRCLMAYVYNRAEMIQNLAWTVGLRLFELPEEIQEKLSHLEKDYFKRHSAALESYMSKV--DLNLN---DMVPPKDPYIKVRVLDDLGEGIVVSDKAANFARHSMHFLKR 710
            L++EL    +GQL  FN++ L +V++E       +++L  + Q +  + ++   +D    +   H SL+RN+RC +AY+Y+R   I+ L W  G     LP  ++  ++  E ++F  +  +L +YM  +  D  L+   DM PPK  YI+VR L D GE  V    +    ++S HFL R
Sbjct:    9 LIRELHRAPEGQLPAFNEDGLRQVLEE-------MKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYLYDRLLRIRALRWEYG---SVLPNALRFHMAAEEMEWFNNYKRSLATYMRSLGGDEGLDITQDMKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPR 179          
BLAST of FC921462 vs. ExPASy Swiss-Prot
Match: PSF1_MOUSE (DNA replication complex GINS protein PSF1 OS=Mus musculus GN=Gins1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.047e-15
Identity = 59/181 (32.60%), Postives = 92/181 (50.83%), Query Frame = 3
Query:  186 LVKELASGEKGQLTHFNDELLNEVIKECSENFLALQSLIRKMQEEGL-DFQTTRNADHYGALINHLSLIRNKRCLMAYVYNRAEMIQNLAWTVGLRLFELPEEIQEKLSHLEKDYFKRHSAALESYMSKV--DLNLN---DMVPPKDPYIKVRVLDDLGEGIVVSDKAANFARHSMHFLKR 710
            LV+EL    +GQL  FN++ L +V++E    +   QS + + +  G  D   T           H +L+RN+RC +AY+Y+R   I+ L W  G     LP  ++  +S  E ++F  +  +L +YM  +  D  L+   D+ PPK  YI+VR L D GE  V    +    ++S HFL R
Sbjct:    9 LVRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSAGRGDLIPT-------VKFRHCALLRNRRCTIAYLYDRLLRIRALRWEYG---SVLPNSLRFHMSAEETEWFNHYKKSLATYMRSLGGDEGLDITQDVKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPR 179          
BLAST of FC921462 vs. ExPASy Swiss-Prot
Match: PSF1_CHAGB (DNA replication complex GINS protein PSF1 OS=Chaetomium globosum GN=PSF1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14
Identity = 62/201 (30.85%), Postives = 100/201 (49.75%), Query Frame = 3
Query:  162 MHGRLGSRLVKELASGEKGQLTH---FNDELLNEVIKECSENFLALQSLIRKMQEEGLDFQTTRNADHYGALINHLSLIRNKRCLMAYVYNRAEMIQNLAWTVGLRLFELPEE-------------IQEKLSHLEKDYFKRHSAALESYMSK-VDLNL-NDMVPPKDPYIKVRVLDDLGEGIVVSDKAANFARHSMHFLKR 710
            M+G LG++LV+     +   LTH   +  EL+  V +E  +    + SL+   Q  G    +T  A     L+NHLS+ RNKRCL+AY   R + ++ L W  G  + +L  +                 LS  E+DYF+++   L +Y  +  D++L   + PP+D +I VRVL D GE I     A N  ++S  ++++
Sbjct:    3 MYGDLGNKLVQHAKRTQN--LTHLPPYQTELVRAVTREVRDLDKDVASLLEPFQ--GSFDPSTDQATACTLLVNHLSMRRNKRCLLAYHRTRTDKLEELVWN-GSDVLDLAGQQAGGVNGAAADSGAGSSLSPQEEDYFRQYGDLLSAYKGQWTDIDLTGSLEPPRDLFIDVRVLKDAGE-IQTEYGAINLTKNSQFYVRQ 197          
BLAST of FC921462 vs. ExPASy Swiss-Prot
Match: PSF1_NEUCR (DNA replication complex GINS protein psf-1 OS=Neurospora crassa GN=psf-1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13
Identity = 61/202 (30.20%), Postives = 98/202 (48.51%), Query Frame = 3
Query:  162 MHGRLGSRLVKELASGEK-GQLTHFNDELLNEVIKECSENFLALQSLIRKMQEEGLDFQTTRNADHYGALINHLSLIRNKRCLMAYVYNRAEMIQNLAWTVGLRLFEL-------PEEIQE---------KLSHLEKDYFKRHSAALESYMSK-VDLNL-NDMVPPKDPYIKVRVLDDLGEGIVVSDKAANFARHSMHFLKR 710
            M+G LG++LV+     +    L  +  EL+  V +E  +    + SL+   Q  G    +   A     L+NHLS+ RNKRCL+AY   R + ++ L W  G  + +L       P+ + E          LS  E+DYF++    L  Y  +  D++L   + PP+D +I VRVL D GE I     A N  ++S  ++++
Sbjct:    3 MYGDLGNKLVQHAKRTQNLSHLPPYQTELVRAVAREIRDLDKDVASLLEPFQ--GSFDPSAEQATACTLLVNHLSMRRNKRCLLAYHRIRTDKLEELVWN-GADILDLAGQTTGGPKGVTEGNEGGGTTSSLSPQEEDYFRQFGDLLALYKGQWTDIDLTGSLEPPRDLFIDVRVLKDAGE-IQTEYGAINLTKNSQFYVRQ 200          
BLAST of FC921462 vs. ExPASy Swiss-Prot
Match: PSF1_YEAST (DNA replication complex GINS protein PSF1 OS=Saccharomyces cerevisiae GN=PSF1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.614e-12
Identity = 57/198 (28.79%), Postives = 98/198 (49.49%), Query Frame = 3
Query:  162 MHGRLGSRLVKELA--------SGEKGQLTHFNDELLNEVIKECSENFLALQSLIRKMQEEGLDFQTTRNADHYGALINHLSLIRNKRCLMAYVYNRAEMIQNLAW-TVGLRLFE---LPEEIQEKLSHLEKDYFKRHSAALESYMS--KVDLNLN-DMVPPKDPYIKVRVLDDLGEGIVVSDKAANFARHSMHFLKR 710
            M+G LG++LV E          S +   L  ++++++  ++KE S N       +++ Q+ G+         ++  L   L + RNKRCL+AY   R +++ ++AW   GL L       ++    LSH E++Y K +   +    S   VD++L+  +VPP D +I VRVL D GE I       N  + S  F+++
Sbjct:    1 MYGDLGNKLVLEAKRTKQLYARSNQDVNLPMYHEDIIRNILKEVS-NLRKNTEYLKEQQQLGMLDDKVAKCQYFVTL---LCMERNKRCLLAYQRLRTDILDSMAWNNNGLDLMSSITFSQQDTNNLSHQEQEYLKEYCDLITDLKSGDLVDIDLSGSLVPPSDVFIDVRVLKDAGE-IQTEYGVFNLIKDSQFFVRQ 193          
BLAST of FC921462 vs. ExPASy Swiss-Prot
Match: PSF1_SCHPO (DNA replication complex GINS protein psf1 OS=Schizosaccharomyces pombe GN=psf1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 55/171 (32.16%), Postives = 85/171 (49.71%), Query Frame = 3
Query:  162 MHGRLGSRLVKELASGEKGQ----LTHFNDELLNEVIKEC-SENFLALQSLIRKMQEEGLDFQTTRNADHYGALIN-HLSLIRNKRCLMAYVYNRAEMIQNLAWTVGLRLFELPEEIQEKLSHLEKDYFKRHSAALESY---MSKVDLNLNDMVPPKDPYIKVRVLDDLGE 647
            M   LG+R  K +   ++ Q    L  +  + +N+V+ E  + +  +L  L     E    FQ   +     AL+  H S I NKRCLMAY   R + ++   W+ G R+      +   LS  E+DY  R+S  L +Y    S++DL    +VPPK+ +I VRVL D+G+
Sbjct:    1 MENGLGNRSNKLIRDSKRTQYLDYLPPYQADTVNDVVNEIRAADRESLGILQNVTHEASQPFQPQDHPSEAAALLMFHSSSIYNKRCLMAYHNLRLQRLRQYCWSGGKRMESC---LDTSLSTYERDYLTRYSELLAAYKGAWSELDLT-GSLVPPKNLFIDVRVLKDVGD 167          
BLAST of FC921462 vs. ExPASy Swiss-Prot
Match: PSF1_KLULA (DNA replication complex GINS protein PSF1 OS=Kluyveromyces lactis GN=PSF1 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 59/203 (29.06%), Postives = 96/203 (47.29%), Query Frame = 3
Query:  162 MHGRLGSRLVKEL--------ASGEKGQLTHFNDELLNEVIKECSENFLALQSLIRKMQEEGLDFQTTRNADHYGALINHLSLIRNKRCLMAYVYNRAEMIQNLAWTVGLRLF--------ELPEEIQEKLSHLEKDYFKRHSAAL----ESYMSKVDLNLNDMVPPKDPYIKVRVLDDLGEGIVVSDKAANFARHSMHFLKR 710
            M+G L ++L+ E         A   K QL  + DEL+  ++KE      +L+  +  ++E+ L  Q  + A     ++  LS+ RNKRCL+AY   R+EM+ ++ W      F         L       LSH E++Y K ++  L       +S++DL    + PP D +I VRVL D G+ I       N  + S  F+++
Sbjct:    1 MYGDLANKLILEAKRTQQLSQAGFNKQQLPVYQDELVRGILKEVG----SLKKNVDYLREQQLTDQDNKVAQCQ-YVVAMLSMERNKRCLLAYQKMRSEMLDSMVWDNNGMEFSSAISNHPNLSSFDSSVLSHAEQEYLKEYAQLLTELKSGELSEIDLT-GMLQPPSDVFIDVRVLKDAGQ-IETEYGVFNLIKDSQFFVRQ 196          
The following BLAST results are available for this feature:
BLAST of FC921462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PSF1_DICDI4.408e-1834.05Probable DNA replication complex GINS protein PSF1... [more]
PSF1_BOVIN6.365e-1733.15DNA replication complex GINS protein PSF1 OS=Bos t... [more]
PSF1_HUMAN1.200e-1531.49DNA replication complex GINS protein PSF1 OS=Homo ... [more]
PSF1_MOUSE2.047e-1532.60DNA replication complex GINS protein PSF1 OS=Mus m... [more]
PSF1_CHAGB8.602e-1430.85DNA replication complex GINS protein PSF1 OS=Chaet... [more]
PSF1_NEUCR9.511e-1330.20DNA replication complex GINS protein psf-1 OS=Neur... [more]
PSF1_YEAST3.614e-1228.79DNA replication complex GINS protein PSF1 OS=Sacch... [more]
PSF1_SCHPO5.219e-1132.16DNA replication complex GINS protein psf1 OS=Schiz... [more]
PSF1_KLULA5.219e-1129.06DNA replication complex GINS protein PSF1 OS=Kluyv... [more]
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Properties
Property NameValue
Genbank descriptionC32105C03EF RVDevelopN Citrus clementina cDNA clone C32105C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921462 ID=FC921462; Name=FC921462; organism=Citrus clementina; type=EST; length=726bp
GGAGCGCCAAATTTGAAAAGCTTCAAAAACTTCCCTGCCAAAAGCGATGA
CCACAATTTAGGTCACAGGCCTAAGAATGAATTCGATCATTTTGATCAAT
TTTCTCACTATTTCGATCTCGCCAAACAAACAGCCTTAACAGGATCTCGA
AAGGAAAAGAAATGCACGGAAGATTGGGAAGCCGACTGGTAAAGGAACTT
GCAAGTGGTGAAAAAGGCCAGCTCACGCATTTCAATGATGAGCTTTTAAA
TGAAGTAATTAAAGAATGCAGTGAAAATTTCCTCGCGCTTCAGTCCTTGA
TAAGGAAAATGCAGGAAGAAGGATTGGATTTTCAAACAACAAGAAATGCG
GATCACTATGGAGCACTTATCAACCACCTTTCTCTAATTCGCAACAAACG
CTGCCTGATGGCATACGTGTACAACCGAGCAGAAATGATACAGAATTTGG
CATGGACAGTTGGGCTTAGGCTCTTTGAGCTGCCCGAAGAAATTCAAGAA
AAACTCAGTCACTTGGAAAAAGATTATTTTAAGAGACATTCTGCAGCGTT
GGAATCATACATGTCGAAAGTGGATCTTAACTTGAATGATATGGTGCCAC
CAAAAGACCCCTACATCAAGGTGAGGGTCCTTGATGATCTCGGTGAAGGA
ATAGTTGTGAGTGATAAGGCAGCCAATTTTGCCCGCCACTCGATGCACTT
TCTCAAACGACTGATGCGNAGCCATA
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