FC921678

Overview
NameFC921678
Unique NameFC921678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921678 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.891e-50
Identity = 102/227 (44.93%), Postives = 144/227 (63.44%), Query Frame = 3
Query:   33 PIQEGQPIVFTYEVNFDSSDIKWPSRWDAYLKMEGSKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPNNAGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKG--WISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSXXXXXXXXWFCI 707
            P +E Q + FTY V+++ SDIKW SRWD YL M   ++HWFSI+NS++V+ FL+GI+ +I +RT+R+D+  Y   +KE   +   E SGWKLV GDVFR P    +L  ++G+G+Q+  M ++ IF A LG +SP+SRG L+T   F++M +GV  G+ A RL+RT     LKG  W   A+  A  +PG+ F I   LN  +WG HS+GA+PF         WF I
Sbjct:  243 PTKENQ-LYFTYSVHWEESDIKWASRWDTYLTMSDVQIHWFSIINSVVVVFFLSGILSMIIIRTLRKDIANY---NKEDDIEDTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRT-----LKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGI 460          
BLAST of FC921678 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.891e-50
Identity = 102/227 (44.93%), Postives = 144/227 (63.44%), Query Frame = 3
Query:   33 PIQEGQPIVFTYEVNFDSSDIKWPSRWDAYLKMEGSKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPNNAGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKG--WISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSXXXXXXXXWFCI 707
            P +E Q + FTY V+++ SDIKW SRWD YL M   ++HWFSI+NS++V+ FL+GI+ +I +RT+R+D+  Y   +KE   +   E SGWKLV GDVFR P    +L  ++G+G+Q+  M ++ IF A LG +SP+SRG L+T   F++M +GV  G+ A RL+RT     LKG  W   A+  A  +PG+ F I   LN  +WG HS+GA+PF         WF I
Sbjct:  242 PTKENQ-LYFTYSVHWEESDIKWASRWDTYLTMSDVQIHWFSIINSVVVVFFLSGILSMIIIRTLRKDIANY---NKEDDIEDTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRT-----LKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGI 459          
BLAST of FC921678 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.891e-50
Identity = 102/227 (44.93%), Postives = 144/227 (63.44%), Query Frame = 3
Query:   33 PIQEGQPIVFTYEVNFDSSDIKWPSRWDAYLKMEGSKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPNNAGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKG--WISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSXXXXXXXXWFCI 707
            P +E Q + FTY V+++ SDIKW SRWD YL M   ++HWFSI+NS++V+ FL+GI+ +I +RT+R+D+  Y   +KE   +   E SGWKLV GDVFR P    +L  ++G+G+Q+  M ++ IF A LG +SP+SRG L+T   F++M +GV  G+ A RL+RT     LKG  W   A+  A  +PG+ F I   LN  +WG HS+GA+PF         WF I
Sbjct:  243 PTKENQ-LYFTYSVHWEESDIKWASRWDTYLTMSDVQIHWFSIINSVVVVFFLSGILSMIIIRTLRKDIANY---NKEDDIEDTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRT-----LKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGI 460          
BLAST of FC921678 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.891e-50
Identity = 102/227 (44.93%), Postives = 144/227 (63.44%), Query Frame = 3
Query:   33 PIQEGQPIVFTYEVNFDSSDIKWPSRWDAYLKMEGSKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPNNAGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKG--WISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSXXXXXXXXWFCI 707
            P +E Q + FTY V+++ SDIKW SRWD YL M   ++HWFSI+NS++V+ FL+GI+ +I +RT+R+D+  Y   +KE   +   E SGWKLV GDVFR P    +L  ++G+G+Q+  M ++ IF A LG +SP+SRG L+T   F++M +GV  G+ A RL+RT     LKG  W   A+  A  +PG+ F I   LN  +WG HS+GA+PF         WF I
Sbjct:  242 PTKENQ-LYFTYSVHWEESDIKWASRWDTYLTMSDVQIHWFSIINSVVVVFFLSGILSMIIIRTLRKDIANY---NKEDDIEDTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRT-----LKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGI 459          
BLAST of FC921678 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.891e-50
Identity = 102/227 (44.93%), Postives = 144/227 (63.44%), Query Frame = 3
Query:   33 PIQEGQPIVFTYEVNFDSSDIKWPSRWDAYLKMEGSKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPNNAGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKG--WISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSXXXXXXXXWFCI 707
            P +E Q + FTY V+++ SDIKW SRWD YL M   ++HWFSI+NS++V+ FL+GI+ +I +RT+R+D+  Y   +KE   +   E SGWKLV GDVFR P    +L  ++G+G+Q+  M ++ IF A LG +SP+SRG L+T   F++M +GV  G+ A RL+RT     LKG  W   A+  A  +PG+ F I   LN  +WG HS+GA+PF         WF I
Sbjct:  242 PTKENQ-LYFTYSVHWEESDIKWASRWDTYLTMSDVQIHWFSIINSVVVVFFLSGILSMIIIRTLRKDIANY---NKEDDIEDTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRT-----LKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGI 459          
BLAST of FC921678 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.556e-47
Identity = 96/220 (43.64%), Postives = 137/220 (62.27%), Query Frame = 3
Query:   54 IVFTYEVNFDSSD-IKWPSRWDAYLK-MEGSKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPNNAGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKGWISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSXXXXXXXXWFCI 707
            I +TY V+F+  D I+W SRWD  L+ M  + + WFSI+NSL+++ FL+G+V +I LRT+ +D+ RY ++D    AQ   E  GWKLV GD+FR P    LL + +G+G QIL M  VT+FFA LGF+SPA+RG L+T  + ++++LG  AGYVA R +++ G    + W +     +   PGI F     +N +LWG  S+ AIPF         WFCI
Sbjct:  267 IAYTYSVSFEEDDKIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSTEDAQ---EEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGG---EKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCI 480          
BLAST of FC921678 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.268e-46
Identity = 94/220 (42.73%), Postives = 137/220 (62.27%), Query Frame = 3
Query:   54 IVFTYEVNFDSS-DIKWPSRWDAYLK-MEGSKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPNNAGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKGWISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSXXXXXXXXWFCI 707
            I +TY ++F+   +I+W SRWD  L+ M  + + WFSI+NSL+++ FL+G+V +I LRT+ +D+ RY ++D    AQ   E  GWKLV GD+FR P    LL + +G+G QIL M  VT+FFA LGF+SPA+RG L+T  + ++++LG  AGYVA R +++ G    + W +     +   PGI F     +N +LWG  S+ AIPF         WFCI
Sbjct:  267 IAYTYSISFEEEKNIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSTEDAQ---EEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGG---EKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCI 480          
BLAST of FC921678 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.268e-46
Identity = 94/220 (42.73%), Postives = 137/220 (62.27%), Query Frame = 3
Query:   54 IVFTYEVNFDSS-DIKWPSRWDAYLK-MEGSKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPNNAGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKGWISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSXXXXXXXXWFCI 707
            I +TY ++F+   +I+W SRWD  L+ M  + + WFSI+NSL+++ FL+G+V +I LRT+ +D+ RY ++D    AQ   E  GWKLV GD+FR P    LL + +G+G QIL M  VT+FFA LGF+SPA+RG L+T  + ++++LG  AGYVA R +++ G    + W +     +   PGI F     +N +LWG  S+ AIPF         WFCI
Sbjct:  266 IAYTYSISFEEEKNIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSTEDAQ---EEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGG---EKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCI 479          
BLAST of FC921678 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.657e-46
Identity = 95/220 (43.18%), Postives = 136/220 (61.82%), Query Frame = 3
Query:   54 IVFTYEVNFDSSD-IKWPSRWDAYLK-MEGSKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPNNAGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKGWISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSXXXXXXXXWFCI 707
            I +TY V+F+    I+W SRWD  L+ M  + + WFSI+NSL+++ FL+G+V +I LRT+ +D+ RY ++D    AQ   E  GWKLV GD+FR P    LL + +G+G QIL M  VT+FFA LGF+SPA+RG L+T  + ++++LG  AGYVA R +++ G    + W +     +   PGI F     +N +LWG  S+ AIPF         WFCI
Sbjct:  267 IAYTYSVSFEEDKKIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSTEDAQ---EEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGG---EKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCI 480          
BLAST of FC921678 vs. ExPASy Swiss-Prot
Match: PHG1A_DICDI (Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.222e-42
Identity = 88/232 (37.93%), Postives = 138/232 (59.48%), Query Frame = 3
Query:   24 VSMPIQEGQP----IVFTYEVNFDSSDIKWPSRWDAYLKMEGSKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPNNAGLLCIMVGNGVQILGMAVVTIFFAALGFMSPASRGTLITGMLFIYMILGVAAGYVAVRLWRTIGCGDLKGWISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSXXXXXXXXWFCI 707
            +S+ ++EG+     +++TYEV +  S + W  RWD Y +   + VHWFSILNSLM++  L  +V +I +RT+++D+ RY  +D        EE +GWK++ GDVFR P++  LL + +G+GVQI  M ++T+ FA LGF+SPA+ G L T ++ ++++  + AGY + R++ TI  G  + W       A   PGI F I   +N  L G+ S+ A+PF         WF I
Sbjct:  232 LSVSVKEGEDQERFVLWTYEVKYTPSPVLWNKRWDIYFESNDNSVHWFSILNSLMIVFILTVMVAMIIIRTLKKDIRRYTSIDTSEDRDSQEE-TGWKMIHGDVFRPPSHPMLLSVCIGSGVQIFSMTLITMIFAVLGFLSPANIGGLATALIVLFVLSAMFAGYFSTRVF-TIFKG--RNWKKNTIYTALSMPGIIFGIFFFVNMFLRGAKSSAAVPFGTFASIIAMWFGI 459          
The following BLAST results are available for this feature:
BLAST of FC921678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
TM9S4_RAT1.891e-5044.93Transmembrane 9 superfamily member 4 OS=Rattus nor... [more]
TM9S4_PONAB1.891e-5044.93Transmembrane 9 superfamily member 4 OS=Pongo abel... [more]
TM9S4_MOUSE1.891e-5044.93Transmembrane 9 superfamily member 4 OS=Mus muscul... [more]
TM9S4_HUMAN1.891e-5044.93Transmembrane 9 superfamily member 4 OS=Homo sapie... [more]
TM9S4_BOVIN1.891e-5044.93Transmembrane 9 superfamily member 4 OS=Bos taurus... [more]
TM9S2_HUMAN2.556e-4743.64Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]
TM9S2_RAT1.268e-4642.73Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]
TM9S2_MOUSE1.268e-4642.73Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_PONAB1.657e-4643.18Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]
PHG1A_DICDI4.222e-4237.93Putative phagocytic receptor 1a OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionC32108A11EF RVDevelopN Citrus clementina cDNA clone C32108A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921678 ID=FC921678; Name=FC921678; organism=Citrus clementina; type=EST; length=708bp
CTATTAAGTGCGATTCAAATGTTGTGTCCATGCCTATTCAGGAAGGCCAA
CCTATCGTCTTTACATACGAGGTTAACTTTGACTCGAGTGATATCAAGTG
GCCGTCGCGTTGGGATGCTTATCTGAAGATGGAGGGATCCAAGGTTCATT
GGTTCTCAATCTTGAATTCTCTGATGGTCATCACCTTCCTTGCTGGTATT
GTCCTTGTGATCTTTTTGAGGACTGTTAGGCGGGATCTGACCCGGTATGA
GGAGCTCGACAAGGAGGCTCAGGCACAGATGAACGAGGAGTTGTCTGGGT
GGAAGCTTGTTGTGGGGGATGTTTTCCGTGCCCCAAATAATGCTGGACTT
TTGTGTATTATGGTTGGAAATGGAGTTCAGATTCTTGGGATGGCTGTTGT
GACTATTTTCTTCGCTGCCCTTGGATTCATGTCGCCAGCGTCCCGTGGAA
CTCTCATCACAGGTATGCTGTTTATCTACATGATTCTTGGTGTTGCAGCT
GGCTATGTTGCAGTTCGTCTTTGGAGGACAATTGGCTGTGGTGATCTCAA
AGGATGGATTTCTGTCGCATGGAAGGCTGCTTGTTTCTTCCCTGGTATTG
CCTTTTTGATTCTGACCACTTTGAATTTCCTATTGTGGGGTAGCCATAGC
ACAGGAGCCATTCCATTTTCCCTGTTTGNTATCCTGCTTCTGCTATGGTT
CTGCATCT
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