FC921746

Overview
NameFC921746
Unique NameFC921746
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921746 vs. ExPASy Swiss-Prot
Match: C3H43_ARATH (Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g48440 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.734e-32
Identity = 69/136 (50.74%), Postives = 86/136 (63.24%), Query Frame = 1
Query:   52 CKFYQGTEGCKHGEACRFSHSMEKSENPLPFSGVNGMKENKGGSLVEMTGLIGCKYHLSAGGCKYGNTCKFSHSKEKPQTYIKKSEKAS-PELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVADEGSD 456
            C FY  T  CK G +C+F+H + +       + V   KE+ GG L    GLI CKY+   GGCKYG TC+F+H+       I KS  AS PELNFLGLP+R  E+ECP+YMRNGSC YG +C+FNHPDP    G+D
Sbjct:  116 CSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVRE-KEDDGGKL----GLIDCKYYFRTGGCKYGETCRFNHT-------IPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYGAECKFNHPDPTTIGGTD 239          
BLAST of FC921746 vs. ExPASy Swiss-Prot
Match: C3H67_ARATH (Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g63260 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.918e-31
Identity = 84/232 (36.21%), Postives = 116/232 (50.00%), Query Frame = 1
Query:   52 CKFYQGTEGCKHGEACRFSHSMEKSENPLPFSGVNGMKENKGGSLVEMTGLIGCKYHLSAGGCKYGNTCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVA------------DEGSDHFNEASNPASRSWSP--NIISRKTVPNLDNHSFHPHWML--KSKFNSLQ-GSVYPQAKAELALSVLRL--AI*QDGRYLTYHHSM 690
            C FY  T  CK+G +C+F+H + +         +   +  +    VE   L+ CKY+   GGCKYG +C+FSH KE        S  + PELNFLGLPIR  E ECPFYMRNGSC +G DC+FNHPDP A            + GS      S  +S SWS   ++    T P + +   H   +    S +N  Q  S YP  ++ LA S  ++  ++ +   +  Y H M
Sbjct:  107 CSFYMRTGSCKYGSSCKFNHPVRRKLQ------IGRERVRERDEDVENPKLMECKYYFRTGGCKYGESCRFSHMKEH------NSPASVPELNFLGLPIRPGEKECPFYMRNGSCKFGSDCKFNHPDPTAIGGVDSPLYRGNNGGSFSPKAPSQASSTSWSSTRHMNGTGTAPFIPSMFPHSRGVTPQASDWNGYQASSAYPPERSPLAPSSYQVNNSLAETSSFSQYQHQM 326          
BLAST of FC921746 vs. ExPASy Swiss-Prot
Match: C3H34_ARATH (Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis thaliana GN=At3g06410 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 52/155 (33.55%), Postives = 78/155 (50.32%), Query Frame = 1
Query:   16 GEGLMEKTVQIQCKFYQGTEGCKHGEACRFSHSMEKSENPLPFSGVNGMKENKGGSLVEMTGLIGCKYHLSAGGCKYGNTCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVADEGSDHFNEASNP 480
            GE   E+  +  C +Y  T  C +G  CRF+H  ++        GV G    + G+L E  G   C++ +  G CK+G +CK+ H    P+        A   L++LG P+R  E EC +Y+R G C +G+ CRFNHP P+A +G     +   P
Sbjct:   48 GESYPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGA---VIGGVRG----EAGALPERMGHPVCQHFMRTGTCKFGASCKYHH----PRQGGGGGSVAPVSLSYLGYPLRPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQP 191          
BLAST of FC921746 vs. ExPASy Swiss-Prot
Match: C3H3_ARATH (Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis thaliana GN=At1g04990 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 55/147 (37.41%), Postives = 79/147 (53.74%), Query Frame = 1
Query:   52 CKFYQGTEGCKHGEACRFSHSMEKSENPLPFSGVNGMKENKGGSLVEMTGLIGCKYHLSAGGCKYGNTCKFSHSKEKPQTYIKKSEKASPEL-NFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVADEG-SDHFNEASNPAS 486
            C+FY  T  C +G +CR++H     ++      V   KE     L E  G   C+Y L  G CKYG TCK+ H K++          A P + N +GLP+R+ E  CP+Y+R G+C +GV C+F+HP P  D G S  +  +S PA+
Sbjct:   53 CQFYLRTGLCGYGSSCRYNHPTHLPQD------VAYYKEE----LPERIGQPDCEYFLKTGACKYGPTCKYHHPKDR--------NGAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVACKFHHPQP--DNGHSTAYGMSSFPAA 179          
BLAST of FC921746 vs. ExPASy Swiss-Prot
Match: C3H12_ORYSJ (Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=Os01g0917400 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 48/134 (35.82%), Postives = 71/134 (52.99%), Query Frame = 1
Query:   31 EKTVQIQCKFYQGTEGCKHGEACRFSHSMEKSENPLPFSGVNGMKENKGGSLVEMTGLIGCKYHLSAGGCKYGNTCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPD 432
            E++ +  C +Y  T  C+ G +CRF+H  +++   L  +    MK    G   E  G   C+Y+L  G CK+G TCKF H +EK             +LN LG P+R  E EC +Y++ G C YG  C+F+HP+
Sbjct:   79 ERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRN---LAIASAR-MK----GEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGI------AGRVQLNTLGYPLRPSEKECAYYLKTGQCKYGNTCKFHHPE 198          
BLAST of FC921746 vs. ExPASy Swiss-Prot
Match: C3H65_ORYSJ (Zinc finger CCCH domain-containing protein 65 OS=Oryza sativa subsp. japonica GN=Os12g0278800 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 1
Query:  163 KENKGGSLVEMTGLIGCKYHLSAGGCKYGNTCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDP 435
            KE +   + E +    CKY+ + GGCK+G  CK+ H   K      K++    +LNFLGLP+R  E ECP+YMR GSC Y  +C+F+HPDP
Sbjct:  227 KEKRKEFISEGSSQEECKYYSTPGGCKFGKACKYLHRDGKEG----KTDAEKVDLNFLGLPLRPGEKECPYYMRTGSCKYATNCKFHHPDP 313          
BLAST of FC921746 vs. ExPASy Swiss-Prot
Match: C3H63_ORYSJ (Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 44/135 (32.59%), Postives = 67/135 (49.63%), Query Frame = 1
Query:   31 EKTVQIQCKFYQGTEGCKHGEACRFSHSMEKSENPLPFSGVNGMKENKGGSLVEMTGLIGCKYHLSAGGCKYGNTCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDP 435
            E+  +  C +Y  T  C+ G  C+F+H  ++         +        G   +  G   C+Y+L  G CK+G TCKF H +EK     +       +LN LG P+R +E EC +Y+R G C +G  C+F+HP P
Sbjct:   55 ERIGEPDCSYYMRTGLCRFGMTCKFNHPADRK--------MAVAAARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRV------QLNALGYPLRPNEKECAYYLRTGQCKFGSTCKFHHPQP 175          
BLAST of FC921746 vs. ExPASy Swiss-Prot
Match: C3H33_ARATH (Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.074e-18
Identity = 45/135 (33.33%), Postives = 67/135 (49.63%), Query Frame = 1
Query:   31 EKTVQIQCKFYQGTEGCKHGEACRFSHSMEKSENPLPFSGVNGMKENKGGSLVEMTGLIGCKYHLSAGGCKYGNTCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDP 435
            E+  +  C +Y  T  C+ G  CRF+H  ++         +        G   E  G   C+Y+L  G CK+G TCKF H + K     + S      LN LG P+R +E++C +++R G C +G  C+FNHP P
Sbjct:   39 ERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRE--------LVIATARMRGEYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVS------LNMLGYPLRSNEVDCAYFLRTGHCKFGGTCKFNHPQP 159          
BLAST of FC921746 vs. ExPASy Swiss-Prot
Match: C3H37_ARATH (Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis thaliana GN=HUA1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.207e-17
Identity = 48/157 (30.57%), Postives = 73/157 (46.50%), Query Frame = 1
Query:   31 EKTVQIQCKFYQGTEGCKHGEACRFSHSMEKSENPLPFSGVNGMKENKGGSLVEMTGLIGCKYHLSAGGCKYGNTCKFSHSKE------------------KPQTYIKKSEKASPEL--NFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVA 441
            E+  +  C +Y  T+ CK+G  C+F+H  E++           +      SL E      C +++  G CK+G +CKF H K+                  +P          +P L  N  GLP+R  E++CPFY++ GSC YG  CR+NHP+  A
Sbjct:  224 ERPGEPDCPYYIKTQRCKYGSKCKFNHPREEA----------AVSVETQDSLPERPSEPMCTFYMKTGKCKFGLSCKFHHPKDIQLPSSSQDIGSSVGLTSEPDATNNPHVTFTPALYHNSKGLPVRSGEVDCPFYLKTGSCKYGATCRYNHPERTA 370          

HSP 2 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 47/167 (28.14%), Postives = 78/167 (46.71%), Query Frame = 1
Query:   19 EGLMEKTVQIQCKFYQGTEGCKHGEACRFSHSMEKSENP----LPFSGVNGMKENKGGSLV-----------------------EMTGLIGCKYHLSAGGCKYGNTCKFSHSKEKPQTYIKKS-EKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDP 435
            +GL  ++ ++ C FY  T  CK+G  CR++H    +  P    + +S V+    N    LV                       +  G   C Y++  G CK+G  CKF H  ++     K++ ++ + +L+  G P R   + CP+YM+ G+C YG  C+F+HP P
Sbjct:  335 KGLPVRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQAAGVNYSLVSSNTANLNLGLVTPATSFYQTLTQPTLGVISATYPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHPPP 501          

HSP 3 Score: 83.9593 bits (206), Expect = 8.648e-16
Identity = 42/129 (32.56%), Postives = 62/129 (48.06%), Query Frame = 1
Query:   52 CKFYQGTEGCKHGEACRFSHSMEKSENPLPFSGVNGMKENKGGSLVEMTGLIGCKYHLSAGGCKYGNTCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPV 438
            C  Y  T  CK GE+CRF H +   E  +P      +  N+     E  G   C Y++    CKYG+ CKF+H +E+    ++  +          LP R  E  C FYM+ G C +G+ C+F+HP  +
Sbjct:  180 CTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNE--EYPERPGEPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQD---------SLPERPSEPMCTFYMKTGKCKFGLSCKFHHPKDI 297          
BLAST of FC921746 vs. ExPASy Swiss-Prot
Match: C3H58_ARATH (Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis thaliana GN=At5g18550 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.576e-17
Identity = 50/173 (28.90%), Postives = 83/173 (47.98%), Query Frame = 1
Query:   16 GEGLMEKTVQIQCKFYQGTEGCKHGEACRFSHSMEKSENPLPFSGVNGMKENKGGSLVEMTGLIGCKYHLSAGGCKYGNTCKFSHSKEKPQTYIKKSEKASP-ELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVADEGSDHFNEASNPASRSWSPNIISRKTVPN 531
            GE   E+  +  C +Y  T  C +G  CRF+H   ++        V G    + G   E  G   C++ +  G CK+G +CK+ H ++         +  +P  LN++G P+R  E EC ++MR G C +G  CR++HP P   +      +    A  +  P++ S +TVP+
Sbjct:   45 GETFPERPDEPDCIYYLRTGVCGYGSRCRFNHPRNRAP-------VLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGG-----GDSVTPVSLNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPPGVQAPSQQQQQQLSAGPTMYPSLQS-QTVPS 204          
The following BLAST results are available for this feature:
BLAST of FC921746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
C3H43_ARATH1.734e-3250.74Zinc finger CCCH domain-containing protein 43 OS=A... [more]
C3H67_ARATH1.918e-3136.21Zinc finger CCCH domain-containing protein 67 OS=A... [more]
C3H34_ARATH7.558e-2033.55Zinc finger CCCH domain-containing protein 34 OS=A... [more]
C3H3_ARATH2.199e-1937.41Zinc finger CCCH domain-containing protein 3 OS=Ar... [more]
C3H12_ORYSJ4.147e-1835.82Zinc finger CCCH domain-containing protein 12 OS=O... [more]
C3H65_ORYSJ5.417e-1845.05Zinc finger CCCH domain-containing protein 65 OS=O... [more]
C3H63_ORYSJ5.417e-1832.59Zinc finger CCCH domain-containing protein 63 OS=O... [more]
C3H33_ARATH7.074e-1833.33Zinc finger CCCH domain-containing protein 33 OS=A... [more]
C3H37_ARATH1.207e-1730.57Zinc finger CCCH domain-containing protein 37 OS=A... [more]
C3H58_ARATH1.576e-1728.90Zinc finger CCCH domain-containing protein 58 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC32108H04EF RVDevelopN Citrus clementina cDNA clone C32108H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921746 ID=FC921746; Name=FC921746; organism=Citrus clementina; type=EST; length=696bp
GGGAAGGAGAGCAAAGGTGAAGGCCTTATGGAGAAGACAGTGCAGATTCA
ATGCAAGTTTTACCAAGGGACAGAAGGATGCAAGCATGGAGAAGCTTGTA
GATTTAGCCACTCCATGGAGAAGTCTGAGAACCCCCTTCCCTTTTCTGGT
GTAAACGGAATGAAGGAGAACAAAGGTGGAAGCCTTGTGGAGATGACAGG
GCTTATTGGATGCAAGTATCACTTATCTGCTGGAGGGTGCAAGTATGGAA
ACACTTGTAAATTTAGTCACTCCAAAGAGAAGCCCCAGACATACATTAAA
AAGTCTGAGAAAGCATCACCTGAGCTTAACTTTTTAGGTCTTCCAATCAG
AGTGCATGAGATAGAATGTCCTTTCTACATGCGCAATGGCTCTTGTGCAT
ATGGAGTTGATTGCAGGTTTAATCATCCTGATCCTGTTGCTGATGAAGGA
TCTGATCATTTCAATGAGGCATCTAACCCAGCTTCAAGATCGTGGTCTCC
AAATATAATATCACGTAAAACCGTTCCCAACTTGGATAATCACTCATTTC
ATCCTCATTGGATGCTAAAATCCAAGTTTAATAGCCTTCAGGGATCCGTT
TACCCACAGGCAAAAGCTGAGCTGGCTCTTTCAGTCCTGCGCTTGGCAAT
CTAACAAGACGGCAGATACCTCACATATCATCATTCAATGATTCCT
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