FC923098
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923098 vs. ExPASy Swiss-Prot
Match: TYW23_ARATH (tRNA wybutosine-synthesizing protein 2/3/4 OS=Arabidopsis thaliana GN=At4g04670 PE=2 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 1.755e-59 Identity = 107/151 (70.86%), Postives = 127/151 (84.11%), Query Frame = 1 Query: 259 FAGVYFV*SC*STRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVTIEHIERVKWYAPHIRHLVADVGCR 711 FAG+ + RAKA+LVYACEWNP A+EAL+ N++ANSVS+ CI+LEGDNR TAPKGVA+RV LGLIP+SE SWVTA+QALR EGG LHVHGNVKDS+E W EHV+K++ +IAR+EG WEVT+EHIE+VKWYAP IRHLVADV CR Sbjct: 845 FAGIGYFVLPFLVRAKAKLVYACEWNPHAIEALRRNVEANSVSERCIILEGDNRITAPKGVADRVNLGLIPSSEGSWVTAIQALRPEGGILHVHGNVKDSDESSWGEHVTKTLSDIARAEGRSWEVTVEHIEKVKWYAPRIRHLVADVRCR 995
BLAST of FC923098 vs. ExPASy Swiss-Prot
Match: TYW23_ORYSJ (tRNA wybutosine-synthesizing protein 2/3/4 OS=Oryza sativa subsp. japonica GN=Os07g0515000 PE=2 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 1.102e-53 Identity = 96/151 (63.58%), Postives = 119/151 (78.81%), Query Frame = 1 Query: 259 FAGVYFV*SC*STRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSENSWVTAVQALRSEGGTLHVHGNVKDSEEKLWAEHVSKSIYEIARSEGHRWEVTIEHIERVKWYAPHIRHLVADVGCR 711 FAG+ + +A A+LVYACEWNP A+EAL+ N+ N V+D CI+LEGDNR TAPKG+A+RVCLGL+P+SE SW TAV+ALR+EGG LH+HGNV DS+E LW ++V KSI IA++ G W VT+EH+ERVKWY PHIRHLV DV CR Sbjct: 891 FAGIGYFVLPFLVKANAKLVYACEWNPHALEALQRNVMDNHVADRCIILEGDNRLTAPKGIADRVCLGLLPSSECSWDTAVRALRAEGGMLHIHGNVNDSDESLWLDNVVKSITNIAKTHGLSWNVTVEHVERVKWYGPHIRHLVVDVKCR 1041
BLAST of FC923098 vs. ExPASy Swiss-Prot
Match: TYW2_DANRE (tRNA wybutosine-synthesizing protein 2 homolog OS=Danio rerio GN=trmt12 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 6.300e-25 Identity = 72/185 (38.92%), Postives = 92/185 (49.73%), Query Frame = 1 Query: 256 YFAGVYFV*SC*STRAKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSENSWVTAVQAL-RSEGGTLHVHGNV----------------------------KDSEE-KLWAEHVSKSIYEIARS-EGHRWEVTIEHIERVKWYAPHIRHLVADVGCRQI 717 YF Y V A A V+ACEWNP AV AL+ NL+ N VS+ C V +GDNR + +A+RV LGLIP+SE W A + L RS GG +H+H NV KD + WA +K I + G W+ I HIE VK YAPHI H+V D+ C+ + Sbjct: 230 YFTLPYLV------HANAAHVHACEWNPDAVAALQRNLEINGVSNRCTVHQGDNRQLSLSDLADRVNLGLIPSSEEGWPVACRLLKRSTGGIMHIHQNVTAPFHHEPSELNSSVEGSSVEVSPLRIQKDMQVWTAWASETAKRICTLLLGITGSEWKTNIRHIEHVKTYAPHISHVVLDLECKPL 408
BLAST of FC923098 vs. ExPASy Swiss-Prot
Match: TYW2_HUMAN (tRNA wybutosine-synthesizing protein 2 homolog OS=Homo sapiens GN=TRMT12 PE=1 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.241e-22 Identity = 67/186 (36.02%), Postives = 87/186 (46.77%), Query Frame = 1 Query: 301 AKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSENSWVTAVQALRSE-GGTLHVHGNV-------------------------------------KDSEEKL-----------WAEHVSKSIYEIARS-EGHRWEVTIEHIERVKWYAPHIRHLVADVGC 708 A A V+ACEWNP AV AL++NL+ N V+D C + GDNR +A+RV LGLIP+SE W A Q LR + GG LH+H NV +DS K+ WAE I + + G W+ I HI+ VK YAPH+ H+V D+ C Sbjct: 256 AGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDNRKLKLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGILHIHQNVESFPGKNLQALGVSKVEKEHWLYPQQITTNQWKNGATRDSRGKMLSPATKPEWQRWAESAETRIATLLQQVHGKPWKTQILHIQPVKSYAPHVDHIVLDLEC 441
BLAST of FC923098 vs. ExPASy Swiss-Prot
Match: TYW2_BOVIN (tRNA wybutosine-synthesizing protein 2 homolog OS=Bos taurus GN=TRMT12 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.241e-22 Identity = 67/186 (36.02%), Postives = 88/186 (47.31%), Query Frame = 1 Query: 301 AKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSENSWVTAVQALRSE-GGTLHVHGNVK------------------------------------DSEEKL-----------WAEHVSKSIYEIARS-EGHRWEVTIEHIERVKWYAPHIRHLVADVGCR 711 A+A V+ACEWNP AV AL++NL+ N V+D C + GDNR VA+RV LGLIP+SE W A + L+ + GG LH+H NV+ DS K WA+ I + G RW+ I HI+ VK YAPH+ H+V D+ CR Sbjct: 247 AEAAFVHACEWNPHAVVALRNNLELNGVADRCQIHFGDNRKLKLSNVADRVNLGLIPSSEEGWPIACRVLKQDAGGILHIHQNVESFPGKTLQPPGSSEMEEHWPSPHQIISNQLNNGATSDSRRKTLSVATKPEWQRWAKAAETRIATLLHQVHGKRWKTQILHIQPVKSYAPHVDHIVLDLECR 432
BLAST of FC923098 vs. ExPASy Swiss-Prot
Match: TYW2_MACFA (tRNA wybutosine-synthesizing protein 2 homolog OS=Macaca fascicularis GN=TRMT12 PE=2 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 4.992e-22 Identity = 66/186 (35.48%), Postives = 87/186 (46.77%), Query Frame = 1 Query: 301 AKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSENSWVTAVQALRSE-GGTLHVHGNV-------------------------------------KDSEEKL-----------WAEHVSKSIYEIARS-EGHRWEVTIEHIERVKWYAPHIRHLVADVGC 708 A A V+ACEWNP AV AL++NL+ N V+D C + GDNR +A+RV LGLIP+SE W A Q LR + GG LH+H NV +D+ K+ WAE I + + G W+ I HI+ VK YAPH+ H+V D+ C Sbjct: 256 AGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDNRKLKLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGILHIHQNVESFPGKNLQPLEVSKTEKEHWLYPQQITTNQWKNGATRDTRGKMLSPATKPEWQRWAESAETRIATLLQQVHGKPWKTQILHIQPVKSYAPHVDHIVLDLEC 441
BLAST of FC923098 vs. ExPASy Swiss-Prot
Match: TYW2_MOUSE (tRNA wybutosine-synthesizing protein 2 homolog OS=Mus musculus GN=Trmt12 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.452e-21 Identity = 64/188 (34.04%), Postives = 83/188 (44.15%), Query Frame = 1 Query: 301 AKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSENSWVTAVQALRSE-GGTLHVHGNVKDSEEKL-----------------------------------------------WAEHVSKSIYEIARS-EGHRWEVTIEHIERVKWYAPHIRHLVADVGCRQI 717 A A V+ACEWNP AV AL++NL+ N V+D C + GDNR +A+RV LGLIP+S+ W A Q LR + GG LH+H NV+ K WAE I + G W I H+ VK YAPH+ H+V D+ CR + Sbjct: 246 AGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDNRKLKLSDIADRVNLGLIPSSKEGWPVACQVLRKDVGGILHIHQNVESFSGKTPQPPGSNNVEKEHWPRPQKITTDTQGNGTTENFRGEISSANKPEWWRWAESAETQIASLLHQVHGKPWRTRILHVHPVKSYAPHVDHIVLDLECRPL 433
BLAST of FC923098 vs. ExPASy Swiss-Prot
Match: TYW2_RAT (tRNA wybutosine-synthesizing protein 2 homolog OS=Rattus norvegicus GN=Trmt12 PE=2 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21 Identity = 65/186 (34.95%), Postives = 81/186 (43.55%), Query Frame = 1 Query: 301 AKARLVYACEWNPCAVEALKHNLQANSVSDHCIVLEGDNRFTAPKGVANRVCLGLIPTSENSWVTAVQALRSE-GGTLHVHGNVKD-----------------------------------------------SEEKLWAEHVSKSIYEIARS-EGHRWEVTIEHIERVKWYAPHIRHLVADVGCR 711 A A V+ACEWNP AV AL+ NL+ N V+D C + GDNR A+RV LGLIP+SE W A Q LR + GG LH+H NV+ E + WAE I + G W I H+ VK YAPH+ H+V D+ CR Sbjct: 246 AGAAFVHACEWNPHAVVALRKNLEINGVADRCQIHFGDNRKLKLSNTADRVNLGLIPSSEEGWPIACQVLRKDVGGILHIHQNVESFSGKNPQPPGSSNMEKKHWPHPQKITTDKQGNRTTGSCMGEMSSASKPEWQRWAESAESQIASLLHQVHGKPWRTRILHVHPVKSYAPHVDHIVLDLECR 431 The following BLAST results are available for this feature:
BLAST of FC923098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923098 ID=FC923098; Name=FC923098; organism=Citrus clementina; type=EST; length=722bpback to top |