FC923454

Overview
NameFC923454
Unique NameFC923454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: BTAF1_HUMAN (TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1 PE=1 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 7.630e-58
Identity = 112/195 (57.44%), Postives = 146/195 (74.87%), Query Frame = 1
Query:    4 SELHKLHHSPKLVALQEIMDECGIGVDGSSSENAVN--VGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLF 582
            S LH + H+PKL AL++++ +CG+G +GS+SE+     V QHRILIF Q K+ LDI+E DL + H+ SVTYLRLDGS+   +R  IV  FN+DP+ID                 ADT+VF+EHDWNPMRD QAMDRAHR+GQK+VV+V+RLI RGTLEEK+M LQ+FK++IANTVI+ EN+S+++M T QLLDLF
Sbjct: 1605 SSLHDIQHAPKLSALKQLLLDCGLG-NGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLF 1798          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: MOT1_SCHPO (Probable helicase mot1 OS=Schizosaccharomyces pombe GN=mot1 PE=1 SV=4)

HSP 1 Score: 208.379 bits (529), Expect = 2.540e-53
Identity = 103/199 (51.76%), Postives = 140/199 (70.35%), Query Frame = 1
Query:    4 SELHKLHHSPKLVALQEIMDECGIGVDGSSSENAVN------VGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLF 582
            S LH L H+PKL AL +++ +CG+G + S + N ++      V +HR+LIF Q K  LD++E+DL Q  M  VTY+RLDGSVE  +R + V  FN+DP+ID                 ADT++F+EHDWNPMRD QAMDRAHR+GQKKVV+V+RLI RG LEEK+M LQRFK+++A+TV+N +NA + ++ T Q+LDLF
Sbjct: 1693 SGLHDLKHAPKLTALGQLLRDCGLG-NSSVNSNGIDSALTNAVSEHRVLIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNNDPSIDVLLLTTHVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCLEEKIMGLQRFKMNVASTVVNQQNAGLSSIGTDQILDLF 1890          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: MOT1_YEAST (TATA-binding protein-associated factor MOT1 OS=Saccharomyces cerevisiae GN=MOT1 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.055e-51
Identity = 100/200 (50.00%), Postives = 141/200 (70.50%), Query Frame = 1
Query:    7 ELHKLHHSPKLVALQEIMDECGIG---VDGSSSENAVN-----VGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLF 582
            +LH + ++PKL AL+ ++ ECGIG   +D  +S++        + QHR LIF Q K  LD++E DLF+ +M SVTY+RLDGS++   R  +V+ FN DP+ID                 ADT++F+EHDWNPM D QAMDRAHR+GQKKVV+V+R+I +GTLEEK+M LQ+FK++IA+TV+N +N+ + +M+T QLLDLF
Sbjct: 1601 DLHDIINAPKLSALRTLLFECGIGEEDIDKKASQDQNFPIQNVISQHRALIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTVVNQQNSGLASMDTHQLLDLF 1800          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_CRYNE (Putative DNA helicase INO80 OS=Cryptococcus neoformans GN=INO80 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.208e-24
Identity = 60/163 (36.81%), Postives = 90/163 (55.21%), Query Frame = 1
Query:  106 VNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLFASAE 594
            +  G HR+L++ Q    +D+IE  L     K   YLRLDGS     R D+V ++ ++P I                 +ADT++F +HDWNP  D QAMDRAHR+GQ K V V+RL+ RGT+EE+++ + R K  I + V+  ++ S       +++ LF   E
Sbjct: 1465 LKAGGHRVLLYFQMTKMMDLIEEYLIFRQYK---YLRLDGSSPIAERRDMVTSWQTNPDIFVFCLSTRAGGLGINLTAADTVIFYDHDWNPSSDAQAMDRAHRVGQTKQVTVYRLVARGTIEERILQMARGKKDIQDVVVGTKSVS-DVAKPSEIVSLFMDDE 1623          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_PHANO (Putative DNA helicase INO80 OS=Phaeosphaeria nodorum GN=INO80 PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.028e-22
Identity = 60/152 (39.47%), Postives = 79/152 (51.97%), Query Frame = 1
Query:  106 VNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNT 561
            +  G HR+L++ Q    +D++E  L   + K   Y RLDGS + E R D V  F SDPTI                 SADT++F + DWNP  D QAMDRAHRLGQ + V V+RLI  GT+EE++      K  +   VI+         NT
Sbjct: 1411 LKAGDHRVLLYFQMTRMIDLMEEYLTYRNYK---YCRLDGSTKLEDRRDTVADFQSDPTIFVFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITSGTIEERIRKRALQKEEVQRVVISGGAGGAVDFNT 1559          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_DROME (Putative DNA helicase Ino80 OS=Drosophila melanogaster GN=Ino80 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.151e-21
Identity = 59/158 (37.34%), Postives = 85/158 (53.80%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLFASAE 594
            HR+LI++Q    +D++E   +  H K   Y+RLDGS +   R D+V  F +   I                 +ADT++F + DWNP  D QAMDRAHRLGQ K V V+RLI +GT+EE+++   R K  I   VI+  N    T+   +++ L    E
Sbjct: 1173 HRVLIYSQMTKMIDLLEE--YMWHRKH-RYMRLDGSSKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDE 1327          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_MOUSE (Putative DNA helicase INO80 complex homolog 1 OS=Mus musculus GN=Ino80 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.503e-21
Identity = 58/159 (36.48%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDL-FQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLFASAE 594
            HR+LI++Q    +D++E  + ++ H    TY+RLDGS +   R D+V  F +   I                 +ADT++F + DWNP  D QAMDRAHRLGQ K V V+RLI +GT+EE+++   + K  I   VI+  N    T+   +++ L    E
Sbjct: 1121 HRVLIYSQMTRMIDLLEEYMVYRKH----TYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDE 1275          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_HUMAN (Putative DNA helicase INO80 complex homolog 1 OS=Homo sapiens GN=INO80 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.503e-21
Identity = 58/159 (36.48%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDL-FQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAENASMKTMNTGQLLDLFASAE 594
            HR+LI++Q    +D++E  + ++ H    TY+RLDGS +   R D+V  F +   I                 +ADT++F + DWNP  D QAMDRAHRLGQ K V V+RLI +GT+EE+++   + K  I   VI+  N    T+   +++ L    E
Sbjct: 1118 HRVLIYSQMTRMIDLLEEYMVYRKH----TYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDE 1272          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_USTMA (Putative DNA helicase INO80 OS=Ustilago maydis GN=INO80 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.348e-21
Identity = 53/138 (38.41%), Postives = 79/138 (57.25%), Query Frame = 1
Query:  121 HRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVINAE 534
            HR+LI+ Q    +D++E  L     K   YLRLDG+ +   R D+V  + + P +                 +ADT++F +HDWNP  D QAMDRAHRLGQ K V V+RLI +GT++E+++ L R K  + + V+  +
Sbjct: 1596 HRVLIYFQMTRMIDLMEEYLIYRQYK---YLRLDGASKISDRRDMVTDWQTKPELFIFLLSTRAGGLGINLTAADTVIFYDHDWNPSNDSQAMDRAHRLGQTKQVTVYRLITKGTIDERIVRLARNKKEVQDIVVGTK 1730          
BLAST of FC923454 vs. ExPASy Swiss-Prot
Match: INO80_MAGGR (Putative DNA helicase INO80 OS=Magnaporthe grisea GN=INO80 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.711e-21
Identity = 56/140 (40.00%), Postives = 77/140 (55.00%), Query Frame = 1
Query:  106 VNVGQHRILIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVESERRFDIVKAFNSDPTIDAXXXXXXXXXXXXXXXSADTLVFMEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSIANTVI 525
            +  G HR+L++ Q    +D++E  L   + K   Y RLDGS + E R D V  F ++P+I                 SADT++F + DWNP  D QAMDRAHRLGQ + V V+RLI RGT+EE++      K  +   VI
Sbjct: 1671 LKAGGHRVLLYFQMTRMIDLMEEYLTYRNWK---YCRLDGSTKFEDRRDTVHDFQTNPSIFVFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRAMQKEEVQRVVI 1807          
The following BLAST results are available for this feature:
BLAST of FC923454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
BTAF1_HUMAN7.630e-5857.44TATA-binding protein-associated factor 172 OS=Homo... [more]
MOT1_SCHPO2.540e-5351.76Probable helicase mot1 OS=Schizosaccharomyces pomb... [more]
MOT1_YEAST4.055e-5150.00TATA-binding protein-associated factor MOT1 OS=Sac... [more]
INO80_CRYNE7.208e-2436.81Putative DNA helicase INO80 OS=Cryptococcus neofor... [more]
INO80_PHANO3.028e-2239.47Putative DNA helicase INO80 OS=Phaeosphaeria nodor... [more]
INO80_DROME1.151e-2137.34Putative DNA helicase Ino80 OS=Drosophila melanoga... [more]
INO80_MOUSE1.503e-2136.48Putative DNA helicase INO80 complex homolog 1 OS=M... [more]
INO80_HUMAN1.503e-2136.48Putative DNA helicase INO80 complex homolog 1 OS=H... [more]
INO80_USTMA3.348e-2138.41Putative DNA helicase INO80 OS=Ustilago maydis GN=... [more]
INO80_MAGGR5.711e-2140.00Putative DNA helicase INO80 OS=Magnaporthe grisea ... [more]

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Properties
Property NameValue
Genbank descriptionC31705C01EF StrClemenN Citrus clementina cDNA clone C31705C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923454 ID=FC923454; Name=FC923454; organism=Citrus clementina; type=EST; length=635bp
ATTTCTGAACTACATAAGCTTCATCACTCTCCCAAATTAGTTGCTCTTCA
GGAGATAATGGATGAGTGTGGAATAGGCGTGGATGGTTCTAGTTCTGAAA
ATGCTGTTAATGTTGGGCAGCACAGAATTTTGATATTTGCTCAGCATAAA
GCCTTTCTAGACATTATTGAAAGAGATTTGTTTCAGACCCATATGAAGAG
TGTAACCTACCTACGGCTAGATGGATCGGTTGAATCAGAAAGACGTTTTG
ATATAGTGAAGGCTTTTAATTCAGACCCTACTATTGATGCACTGCTTCTT
ACGACGCATGTTGGTGGCCTGGGATTGAACCTGACATCTGCTGACACCCT
TGTTTTCATGGAGCATGACTGGAATCCTATGCGGGACCATCAGGCAATGG
ACAGAGCACACAGATTAGGGCAGAAAAAGGTCGTACATGTCCATCGTCTC
ATTATGCGCGGCACACTGGAAGAGAAAGTTATGAGCCTCCAACGGTTTAA
AGTTTCTATTGCAAATACCGTAATTAATGCAGAGAATGCCAGCATGAAAA
CGATGAATACTGGCCAGTTGCTTGATTTATTCGCTTCTGCGGAAACGCCT
AANAAGGGTGGCGGGGTATCAAAGCTCTCTGATGT
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