FC923526

Overview
NameFC923526
Unique NameFC923526
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length618
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig399 contig Ccv1_Contig399:204..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_ARATH (Protein CutA, chloroplastic OS=Arabidopsis thaliana GN=CUTA PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 8.577e-51
Identity = 105/147 (71.43%), Postives = 123/147 (83.67%), Query Frame = 1
Query:   13 SSSLKTGSAPS---LPFFGSKFSNQARAKSSNTIKMEGNSNTVPSIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTRD 444
            SS  K+G A S   +P   SKFS++A    S++I+ME +S TVPSIVVYVTVP++EAGKKLA SIV+ KLAACVN VPGIESVYEW+G++Q+D+EELLIIKTRQSLLE LTEHV ANHEYD PEVIALPITGGS  YLEWLK+STR+
Sbjct:   39 SSPFKSGCAQSFSVVPLLRSKFSSKA---FSSSIRMEESSKTVPSIVVYVTVPNREAGKKLANSIVQEKLAACVNIVPGIESVYEWEGKVQSDSEELLIIKTRQSLLEPLTEHVNANHEYDVPEVIALPITGGSDKYLEWLKNSTRN 182          
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA1_ORYSJ (Protein CutA 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CUTA1 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.361e-46
Identity = 91/126 (72.22%), Postives = 105/126 (83.33%), Query Frame = 1
Query:   67 FSNQARAKSSNTIKMEGNSNTVPSIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTRD 444
            F+      SS + +ME  S TVPSIVVYVTVP+KEAGK+LA SI+  KLAACVN VPGIESVY W+G++QTDAEELLIIKTR+SLL+ LTEHVKANHEYD PEVIALPI GG+  YLEWLK+STR+
Sbjct:   51 FAGVRSLSSSASARMESTSTTVPSIVVYVTVPNKEAGKRLAGSIISEKLAACVNIVPGIESVYWWEGKVQTDAEELLIIKTRESLLDALTEHVKANHEYDVPEVIALPIKGGNLKYLEWLKNSTRE 176          
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_HUMAN (Protein CutA OS=Homo sapiens GN=CUTA PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.525e-23
Identity = 50/111 (45.05%), Postives = 79/111 (71.17%), Query Frame = 1
Query:  112 EGNSNTVPSIV--VYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSST 438
            +  S  VP  V   +VT P+++  K++A ++V+ +LAACVN +P I S+YEWKG+I+ D+E L++IKT+ SL+  LT+ V++ H Y+  EVIALP+  G+ PYL+W++  T
Sbjct:   58 DSGSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVT 168          
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_RAT (Protein CutA OS=Rattus norvegicus GN=Cuta PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.991e-23
Identity = 59/147 (40.14%), Postives = 86/147 (58.50%), Query Frame = 1
Query:    4 PTLSSSLKTGSAPSLPFFGSKFSNQARAKSSNTIKMEGNSNTVPSIV--VYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSST 438
            P    S+ +GS PS P   S                   S  VP  V   +VT P+++  K++A ++V+ +LAACVN +P I S+YEWKG+I+ D+E L++IKT+ SL+  LTE V++ H Y+  EVIALP+  G+ PYL W+   T
Sbjct:   38 PRALLSMASGSPPSQPSPAS------------------GSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWVHQVT 166          
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_MOUSE (Protein CutA OS=Mus musculus GN=Cuta PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 2.601e-23
Identity = 51/108 (47.22%), Postives = 76/108 (70.37%), Query Frame = 1
Query:  121 SNTVPSIV--VYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSST 438
            S  VP  V   +VT P+++  K++A ++V+ +LAACVN +P I S+YEWKG+I+ D+E L++IKT+ SL+  LTE V++ H Y+  EVIALP+  G+ PYL W+   T
Sbjct:   59 SGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWVHQVT 166          
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_THET8 (Divalent-cation tolerance protein cutA OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=cutA PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.396e-23
Identity = 48/99 (48.48%), Postives = 70/99 (70.71%), Query Frame = 1
Query:  142 VVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSST 438
            VV +TVPS+E  + +A+++V+ +LAACVN VPG+ S+Y W+GE+  D E LL++KT       L E VKA H Y  PE++ALPI  G++ YL+WL+ +T
Sbjct:    4 VVLITVPSEEVARTIAKALVEERLAACVNIVPGLTSIYRWQGEVVEDQELLLLVKTTTHAFPKLKERVKALHPYTVPEIVALPIAEGNREYLDWLRENT 102          
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_XENLA (Protein CutA homolog OS=Xenopus laevis GN=cuta PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.202e-22
Identity = 48/93 (51.61%), Postives = 67/93 (72.04%), Query Frame = 1
Query:  148 YVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWL 426
            YVT P+    K +A  +V+ KLAACVN +P I S+YEWKG+++ D E LL+IKTR S +  LTE+V++ H Y+  EVI+LPI  G+ PYL+W+
Sbjct:   53 YVTCPNDTVAKDIARGLVERKLAACVNVIPQITSIYEWKGKLEEDTEVLLMIKTRSSKVSALTEYVRSVHPYEVCEVISLPIEQGNPPYLKWV 145          
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_BOVIN (Protein CutA OS=Bos taurus GN=CUTA PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.755e-22
Identity = 55/145 (37.93%), Postives = 90/145 (62.07%), Query Frame = 1
Query:    4 PTLSSSLKTGSAPSLPFFGSKFSNQARAKSSNTIKMEGNSNTVPSIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSST 438
            P    S+ +GS P+ P           + SS +  + G+ +       +VT P+++  K++A ++V+ +LA CVN VP I S+YEWKG+I+ D+E L++IKT+ SL+  LT+ V++ H Y+  EVIALP+  G+ PYL+W++  T
Sbjct:   38 PRALLSMASGSPPAQP-----------SSSSRSAYVPGSVSAA-----FVTCPNEKVAKEIARAVVEKRLA-CVNLVPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNSPYLQWVRQVT 165          
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_ERWCT (Divalent-cation tolerance protein cutA OS=Erwinia carotovora subsp. atroseptica GN=cutA PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.629e-19
Identity = 39/102 (38.24%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  136 SIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            ++V+  T P     ++LA S+++ +LAACV  +PG  S+Y W+G+++  +E  ++IK+  S  + L  H+K  H YD PE++ LP++GG   YL WL +S R
Sbjct:    9 AVVILCTAPDDACAQRLANSLLETRLAACVTLLPGARSLYYWEGKLEQQSEVQMLIKSDTSHQQALLTHLKQQHPYDTPELLVLPVSGGDSDYLTWLNASLR 110          
BLAST of FC923526 vs. ExPASy Swiss-Prot
Match: CUTA_SHISS (Divalent-cation tolerance protein cutA OS=Shigella sonnei (strain Ss046) GN=cutA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18
Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  112 EGNSNTVPSIVVYVTVPSKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDAPEVIALPITGGSQPYLEWLKSSTR 441
            E +SNT  S+VV  T P +   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    4 EKSSNTA-SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112          
The following BLAST results are available for this feature:
BLAST of FC923526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CUTA_ARATH8.577e-5171.43Protein CutA, chloroplastic OS=Arabidopsis thalian... [more]
CUTA1_ORYSJ6.361e-4672.22Protein CutA 1, chloroplastic OS=Oryza sativa subs... [more]
CUTA_HUMAN1.525e-2345.05Protein CutA OS=Homo sapiens GN=CUTA PE=1 SV=2[more]
CUTA_RAT1.991e-2340.14Protein CutA OS=Rattus norvegicus GN=Cuta PE=1 SV=... [more]
CUTA_MOUSE2.601e-2347.22Protein CutA OS=Mus musculus GN=Cuta PE=2 SV=3[more]
CUTA_THET83.396e-2348.48Divalent-cation tolerance protein cutA OS=Thermus ... [more]
CUTA_XENLA2.202e-2251.61Protein CutA homolog OS=Xenopus laevis GN=cuta PE=... [more]
CUTA_BOVIN3.755e-2237.93Protein CutA OS=Bos taurus GN=CUTA PE=1 SV=1[more]
CUTA_ERWCT6.629e-1938.24Divalent-cation tolerance protein cutA OS=Erwinia ... [more]
CUTA_SHISS3.290e-1840.00Divalent-cation tolerance protein cutA OS=Shigella... [more]

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Properties
Property NameValue
Genbank descriptionC31706A09EF StrClemenN Citrus clementina cDNA clone C31706A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923526 ID=FC923526; Name=FC923526; organism=Citrus clementina; type=EST; length=618bp
GGTCCCACTCTCTCTTCTTCCCTCAAAACGGGTTCCGCTCCTTCTCTCCC
GTTCTTCGGATCAAAGTTTAGTAACCAAGCTCGCGCGAAGAGTAGTAACA
CGATCAAAATGGAAGGCAACAGCAACACTGTACCAAGTATTGTAGTTTAT
GTCACCGTTCCTAGCAAAGAAGCAGGAAAGAAACTGGCTGAAAGCATAGT
GAAAGCAAAACTTGCAGCATGTGTGAATCGAGTGCCAGGTATTGAATCTG
TTTACGAGTGGAAGGGAGAGATCCAGACAGATGCTGAAGAACTTCTTATT
ATAAAGACTAGGCAATCCCTTTTGGAAACTCTGACAGAGCATGTCAAGGC
AAATCATGAATATGATGCGCCAGAAGTAATTGCCTTGCCCATCACTGGTG
GCAGCCAGCCATACCTAGAGTGGCTAAAAAGCAGTACAAGGGACTGACTC
CCGCGGATGTAGTGTGATGTAGTGTGTGGACGCTGTAACTGATAAGCTCC
TTTTGTTGTTGGGTTGAGTGTGCAGATGGTACTACTACTTGAATAAAGTT
TGTATATTTTATAATCGAACTGGAACATATCGTGATGAATTCTATGTTGG
CAAAACTTGTGAGATGAT
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