FC923585

Overview
NameFC923585
Unique NameFC923585
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923585_ssr109 microsatellite FC923585_ssr109:109..120. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC923585 vs. ExPASy Swiss-Prot
Match: PMP22_ARATH (Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.664e-48
Identity = 87/174 (50.00%), Postives = 117/174 (67.24%), Query Frame = 3
Query:  135 KEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVXXXXXXXXXXXMFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARS 656
            K   ++YL QLQ HPLRTKAITAG+L+G SD ++QK+SG+           + +   + GP GHF H  +D  F            V+LEQLT SP N+ LFM+YYG+V+E   W+LV+ +++K YP+VQLTAW F+P+VGW+NY+Y+PL FRV+ HS VA  W IFL L+ARS
Sbjct:    8 KTTLQRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVIFAGGFLGPAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERTPWTLVRERIKKTYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLTLRARS 181          
BLAST of FC923585 vs. ExPASy Swiss-Prot
Match: PXMP2_MOUSE (Peroxisomal membrane protein 2 OS=Mus musculus GN=Pxmp2 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.244e-14
Identity = 50/180 (27.78%), Postives = 93/180 (51.67%), Query Frame = 3
Query:  120 MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKIS-----GVXXXXXXXXXXXMFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGL-VVEGRSWSLVKNKVRKDY-PSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 638
            +  + K A  +YL+ L+++P+ TKA+++GIL+   + +AQ I                   + YG    GP  H+L+  M+               +LL++L  +P   FL + ++ + ++EG++ S+   K+R  + P++Q+  WR W  + ++N  Y+PLQFRV+F +  A  W  +L
Sbjct:   14 LGSLPKRALAQYLLLLKLYPVLTKAVSSGILSALGNLLAQTIEKKQRKDSRLLEVSGLLRYLVYGLFVTGPLSHYLYLFMEYSVPPEVPWASVKR-LLLDRLFFAP--TFLLLFFFVMNLLEGKNVSVFVAKMRSGFWPALQMN-WRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189          
BLAST of FC923585 vs. ExPASy Swiss-Prot
Match: PXMP2_RAT (Peroxisomal membrane protein 2 OS=Rattus norvegicus GN=Pxmp2 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.240e-14
Identity = 50/180 (27.78%), Postives = 93/180 (51.67%), Query Frame = 3
Query:  120 MSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKIS-----GVXXXXXXXXXXXMFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGL-VVEGRSWSLVKNKVRKDY-PSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 638
            +  + K A  +YL+ L+ +P+ TKA+++GIL+   + +AQ I                   + YG    GP  H+L+  M+  +            +LL++L  +P   FL + ++ + ++EG++ S+   K+R  + P++Q+  WR W  + ++N  Y+PLQFRV+F +  A  W  +L
Sbjct:   14 LRSLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLRYLVYGLFVTGPLSHYLYLFMEY-WVPPEVPWARVKRLLLDRLFFAP--TFLLLFFFVMNLLEGKNISVFVAKMRSGFWPALQMN-WRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189          
BLAST of FC923585 vs. ExPASy Swiss-Prot
Match: PXMP2_BOVIN (Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.107e-13
Identity = 51/183 (27.87%), Postives = 86/183 (46.99%), Query Frame = 3
Query:  111 QPAMSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVXXXXXXXXXXXM-------FYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 638
            +  +  + + A  +YL  L+++P+ TKA T+GIL+   + +AQ I              +        YGF + GP GHF + LM+  +            +LL++L  +P    LF +    + EG+  +    K++  +       WR W  V ++N  YIP+QFRV+F + VA  W  +L
Sbjct:   11 EAGLGPLPRRALSQYLRLLRLYPVLTKAATSGILSALGNFLAQLIEKKQKKENCSQKLDVSGPLRYAIYGFFFTGPLGHFFYLLMER-WIPSEVPLAGIKRLLLDRLLFAPAFLSLFFLVMNFL-EGQDTAAFAAKMKSGFWPALRMNWRVWTPVQFININYIPVQFRVLFANLVALFWYAYL 191          
BLAST of FC923585 vs. ExPASy Swiss-Prot
Match: PX24C_DICDI (PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.593e-13
Identity = 40/166 (24.10%), Postives = 83/166 (50.00%), Query Frame = 3
Query:  153 YLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVXXXXXXXXXXXMFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKA 650
            Y+ +L+  P++TKA+T+  L+  S  +AQK                 +G     P  H+ H ++D +F            ++++QL  +P+ N  F      +++G+  S++       +P+++  +W+ WP+   +N++++P   RV+F + V  CW I+L++ A
Sbjct:   17 YMKKLKSKPIQTKALTSATLSFISSVVAQKFIEKKKINWNAVVKFTVWGLI-SSPLVHYWHIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAFYSVLA-ILDGKPKSILFKLYFDLFPTLK-ASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSILA 179          
BLAST of FC923585 vs. ExPASy Swiss-Prot
Match: PX24D_DICDI (PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.365e-12
Identity = 52/172 (30.23%), Postives = 79/172 (45.93%), Query Frame = 3
Query:  135 KEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVXXXXXXXXXXXMF----YGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 638
            K A   YL QL  +P+ TKA+T+G L   SD++ Q I                    +GFA  GP  H+  K +D  F            + ++Q+  SP  NFLF    G ++EG+S   +  K++KD+ +  ++    WP + +VN+ YI    RV F +     W  FL
Sbjct:    9 KLAQSHYLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFGFAVTGPLFHYWFKYLDKHFPKKSYRHAFIK-LTIDQVVCSPVFNFLFFSGMG-ILEGKSKDDIVEKLKKDWLTTYVSDCVVWPFINFVNFAYISSIHRVTFMNVCNIGWGAFL 178          
BLAST of FC923585 vs. ExPASy Swiss-Prot
Match: PXMP2_HUMAN (Peroxisomal membrane protein 2 OS=Homo sapiens GN=PXMP2 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.329e-12
Identity = 48/182 (26.37%), Postives = 83/182 (45.60%), Query Frame = 3
Query:  111 QPAMSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKIS------GVXXXXXXXXXXXMFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 638
            +  +  + + A  +YL+ L+++P+ TKA T+GIL+   + +AQ I                      YGF + GP  HF +  M+  +            +LL++L  +P    LF +    + EG+  S    K+R  +       WR W  + ++N  Y+PL+FRV+F +  A  W  +L
Sbjct:   11 EAGLGALPRRALAQYLLFLRLYPVLTKAATSGILSALGNFLAQMIEKKRKKENSRSLDVGGPLRYAVYGFFFTGPLSHFFYFFMEH-WIPPEVPLAGLRRLLLDRLVFAPAFLMLFFLIMNFL-EGKDASAFAAKMRGGFWPALRMNWRVWTPLQFININYVPLKFRVLFANLAALFWYAYL 190          
BLAST of FC923585 vs. ExPASy Swiss-Prot
Match: MPV17_XENLA (Protein Mpv17 OS=Xenopus laevis GN=mpv17 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.329e-12
Identity = 49/172 (28.49%), Postives = 77/172 (44.77%), Query Frame = 3
Query:  144 WRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKI---SGVXXXXXXXXXXXMFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKA 650
            WR Y   L  HP + + +TAG L G  D I+Q++    G+           M  GF + GP     +K++D I             +LL+Q+  +P     F+      + G S   +  K+++DY    +T +  WP V   N+ +IPL  R+    FVA  W  +L+ KA
Sbjct:    5 WRAYQRLLGAHPWKVQIVTAGSLVGVGDVISQQLLERKGLKGHSIERTVKMMGIGFCFVGPVVGGWYKILDRIIPGSGKPVALKK-MLLDQVAFAPCFLGCFLSIAS-ALNGLSGEQIWGKLKRDYKDALITNYYIWPAVQVANFYFIPLYHRLAVVQFVAIIWNSYLSWKA 174          
The following BLAST results are available for this feature:
BLAST of FC923585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PMP22_ARATH7.664e-4850.00Peroxisomal membrane protein PMP22 OS=Arabidopsis ... [more]
PXMP2_MOUSE4.244e-1427.78Peroxisomal membrane protein 2 OS=Mus musculus GN=... [more]
PXMP2_RAT7.240e-1427.78Peroxisomal membrane protein 2 OS=Rattus norvegicu... [more]
PXMP2_BOVIN2.107e-1327.87Peroxisomal membrane protein 2 OS=Bos taurus GN=PX... [more]
PX24C_DICDI3.593e-1324.10PXMP2/4 family protein 3 OS=Dictyostelium discoide... [more]
PX24D_DICDI1.365e-1230.23PXMP2/4 family protein 4 OS=Dictyostelium discoide... [more]
PXMP2_HUMAN2.329e-1226.37Peroxisomal membrane protein 2 OS=Homo sapiens GN=... [more]
MPV17_XENLA2.329e-1228.49Protein Mpv17 OS=Xenopus laevis GN=mpv17 PE=2 SV=2[more]
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Properties
Property NameValue
Genbank descriptionC31706G08EF StrClemenN Citrus clementina cDNA clone C31706G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923585 ID=FC923585; Name=FC923585; organism=Citrus clementina; type=EST; length=656bp
GAGATTCATCACAGCAACAAATAAATATCAGAACACCGACCCCGATCTCC
ACCTACCATTGTTGAATCGTCATTCGCTCATCACCAGGCTCTTCACAGGC
TTACGGTCGCCAGCCAGCCATGTCTGATGTAGCCAAAGAGGCTTGGAGAA
AATATCTCATACAACTCCAAGTTCACCCTTTGAGAACCAAGGCAATCACC
GCTGGTATATTAGCTGGGTGTAGTGATGCCATTGCCCAGAAGATTTCTGG
GGTCAAAAAGCTTCAACTTAAAAGATTGTTGCTTCTTATGTTTTATGGTT
TTGCATATGGAGGACCATTTGGGCATTTTCTTCACAAATTGATGGATATT
ATTTTCAAGGGAAAGAAGGACAAGAAAACTGTTGCGAAGAAGGTGTTGTT
GGAGCAACTAACTTCTTCACCTTGGAACAATTTCCTTTTCATGATGTACT
ATGGCTTGGTGGTTGAAGGAAGATCATGGAGTTTAGTCAAGAATAAAGTT
CGGAAGGACTATCCTTCTGTTCAGTTGACTGCATGGAGGTTTTGGCCTAT
AGTTGGCTGGGTGAACTACCAGTACATCCCTCTGCAATTTCGCGTTGTGT
TTCATAGCTTTGTTGCCTCATGCTGGGCTATCTTCCTCAATTTGAAAGCA
AGATCC
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