FC923855

Overview
NameFC923855
Unique NameFC923855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923855 vs. ExPASy Swiss-Prot
Match: SINA2_ARATH (E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.716e-51
Identity = 94/139 (67.63%), Postives = 108/139 (77.70%), Query Frame = 2
Query:  251 MAPGGGICKEVIESSIEFSDYEMATSSVELRGSPCRKATTGFSGNLGTTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEK 667
            MAPGG   KEV+ES+    DYE+ T+ VE+  +   K  +   G  G  SNN V+ELLECPVC NLMYPPI+QCPNGHTLCS+CK RV+  CPTCR+ELGNIRCLALEKVAESLE+PCRYQ  GC DIFPYYSKLKHE+
Sbjct:    1 MAPGGSALKEVMESNSTGMDYEVKTAKVEVNNNKPTKPGSAGIGKYGIHSNNGVYELLECPVCTNLMYPPIHQCPNGHTLCSNCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRYQNLGCHDIFPYYSKLKHEQ 139          
BLAST of FC923855 vs. ExPASy Swiss-Prot
Match: SINA1_ARATH (Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.561e-49
Identity = 94/140 (67.14%), Postives = 108/140 (77.14%), Query Frame = 2
Query:  251 MAPGGGICKEVIESSIEFSDYEMATSSVELRGSPCRKATTGFSGNLGTT-SNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEK 667
            MAPGG   KE +ES+    DYE+  + VE    P +      SG++G   S+N V+ELLECPVC NLMYPPI+QCPNGHTLCSSCK RV+  CPTCR+ELGNIRCLALEKVAESLE+PCRYQ  GCQDIFPYYSKLKHE+
Sbjct:    1 MAPGGSALKEALESNSTGVDYEVKMAKVEANSKPTKSG----SGSIGKFHSSNGVYELLECPVCTNLMYPPIHQCPNGHTLCSSCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRYQNLGCQDIFPYYSKLKHEQ 136          
BLAST of FC923855 vs. ExPASy Swiss-Prot
Match: SINA3_ARATH (E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.154e-38
Identity = 73/96 (76.04%), Postives = 81/96 (84.38%), Query Frame = 2
Query:  377 SGNLGTTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHE 664
            SG L TT++  VHELLECPVC N MYPPI+QC NGHTLCS+CKARV   CPTCR ELG+IRCLALEKVAESLELPC++   GC +IFPYYSKLKHE
Sbjct:   48 SGLLPTTTS--VHELLECPVCTNSMYPPIHQCHNGHTLCSTCKARVHNRCPTCRQELGDIRCLALEKVAESLELPCKHMSLGCPEIFPYYSKLKHE 141          
BLAST of FC923855 vs. ExPASy Swiss-Prot
Match: SINA4_ARATH (E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.377e-36
Identity = 69/107 (64.49%), Postives = 77/107 (71.96%), Query Frame = 2
Query:  344 GSPCRKATTGFSGNLGTTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHE 664
            G+      T   G   T     V+ELLECPVC   MYPPI+QC NGHTLCS+CK RV   CPTCR ELG+IRCLALEKVAESLELPC++   GC +IFPYYSKLKHE
Sbjct:   36 GAAAAAVVTNIVGPTATAPATSVYELLECPVCTYSMYPPIHQCHNGHTLCSTCKVRVHNRCPTCRQELGDIRCLALEKVAESLELPCKFYNLGCPEIFPYYSKLKHE 142          
BLAST of FC923855 vs. ExPASy Swiss-Prot
Match: SINA5_ARATH (E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.523e-36
Identity = 67/85 (78.82%), Postives = 73/85 (85.88%), Query Frame = 2
Query:  410 VHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHE 664
            V+ELLECPVC N MYPPI+QC NGHTLCS+CK+RV   CPTCR ELG+IRCLALEKVAESLELPC+Y   GC  IFPYYSKLKHE
Sbjct:   40 VYELLECPVCTNSMYPPIHQCHNGHTLCSTCKSRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYNLGCLGIFPYYSKLKHE 124          
BLAST of FC923855 vs. ExPASy Swiss-Prot
Match: SINA_SCHMA (E3 ubiquitin-protein ligase sina OS=Schistosoma mansoni GN=SINA PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.023e-22
Identity = 51/118 (43.22%), Postives = 74/118 (62.71%), Query Frame = 2
Query:  320 ATSSVELRGSPCRKATTGFS---GNLGTTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHE 664
            +T S+ L GS    + T  +    N   +S+ D+  L ECPVC++   PPI QC +GH +C+SC++++ + CPTCR  L NIR LA+EK+A S+  PC+Y   GC + F Y SK +HE
Sbjct:   87 STCSMSLPGSMSSASDTVCNILPHNTSDSSSIDLASLFECPVCMDYALPPIMQCQSGHIVCASCRSKL-SSCPTCRGNLDNIRNLAMEKLASSVLFPCKYSTSGCPETFHYTSKSEHE 203          

HSP 2 Score: 24.6386 bits (52), Expect = 1.023e-22
Identity = 7/9 (77.78%), Postives = 8/9 (88.89%), Query Frame = 1
Query:  670 CNYRPYNCP 696
            C YRPY+CP
Sbjct:  206 CEYRPYDCP 214          
BLAST of FC923855 vs. ExPASy Swiss-Prot
Match: SIA1B_MOUSE (E3 ubiquitin-protein ligase SIAH1B OS=Mus musculus GN=Siah1b PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 2
Query:  392 TTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEK 667
            T SNND+  L ECPVC + + PPI QC +GH +CS+C+ ++ T CPTCR  LG+IR LA+EKVA S+  PC+Y   GC+   P+  K +HE+
Sbjct:   29 TASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAVEKVANSVLFPCKYSASGCEITLPHTKKAEHEE 119          
BLAST of FC923855 vs. ExPASy Swiss-Prot
Match: SIAH1_RAT (E3 ubiquitin-protein ligase SIAH1 OS=Rattus norvegicus GN=Siah1 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 2
Query:  392 TTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEK 667
            T SNND+  L ECPVC + + PPI QC +GH +CS+C+ ++ T CPTCR  LG+IR LA+EKVA S+  PC+Y   GC+   P+  K +HE+
Sbjct:   29 TASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKAEHEE 119          
BLAST of FC923855 vs. ExPASy Swiss-Prot
Match: SIA1A_MOUSE (E3 ubiquitin-protein ligase SIAH1A OS=Mus musculus GN=Siah1a PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 2
Query:  392 TTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEK 667
            T SNND+  L ECPVC + + PPI QC +GH +CS+C+ ++ T CPTCR  LG+IR LA+EKVA S+  PC+Y   GC+   P+  K +HE+
Sbjct:   29 TASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKAEHEE 119          
BLAST of FC923855 vs. ExPASy Swiss-Prot
Match: SIAH1_HUMAN (E3 ubiquitin-protein ligase SIAH1 OS=Homo sapiens GN=SIAH1 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 2
Query:  392 TTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEK 667
            T SNND+  L ECPVC + + PPI QC +GH +CS+C+ ++ T CPTCR  LG+IR LA+EKVA S+  PC+Y   GC+   P+  K  HE+
Sbjct:   29 TASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEE 119          
The following BLAST results are available for this feature:
BLAST of FC923855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SINA2_ARATH3.716e-5167.63E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis ... [more]
SINA1_ARATH1.561e-4967.14Putative E3 ubiquitin-protein ligase SINAT1 OS=Ara... [more]
SINA3_ARATH6.154e-3876.04E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis ... [more]
SINA4_ARATH3.377e-3664.49E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis ... [more]
SINA5_ARATH7.523e-3678.82E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis ... [more]
SINA_SCHMA1.023e-2243.22E3 ubiquitin-protein ligase sina OS=Schistosoma ma... [more]
SIA1B_MOUSE1.627e-2251.09E3 ubiquitin-protein ligase SIAH1B OS=Mus musculus... [more]
SIAH1_RAT2.125e-2251.09E3 ubiquitin-protein ligase SIAH1 OS=Rattus norveg... [more]
SIA1A_MOUSE2.125e-2251.09E3 ubiquitin-protein ligase SIAH1A OS=Mus musculus... [more]
SIAH1_HUMAN3.625e-2251.09E3 ubiquitin-protein ligase SIAH1 OS=Homo sapiens ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31709F05EF StrClemenN Citrus clementina cDNA clone C31709F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923855 ID=FC923855; Name=FC923855; organism=Citrus clementina; type=EST; length=698bp
GGTCTTTGTTTTTTGTTTTTTCATTTTTGGGTCCTAAATGGAGAAATAAT
TGAGTCCCAAAGTTTTCATTAATTGAAATGATTGAATCTTCAATCGTTTC
TTAGCTGCATTTCTCATCTGGGTTTGTTTCTTAAGGCAAAACCAGCTAAA
AAGAAAGAAAGTGGTATCATTTGCAGTGAAGATTATGATGCTGATTTCGA
TTTGGGAACGGAGAGACATATAGTAGTAGCAGTTTCTAAGGGAAGGCAGC
ATGGCTCCTGGAGGAGGAATATGCAAGGAGGTGATTGAGTCTAGCATTGA
GTTTTCAGATTATGAAATGGCAACTTCTAGTGTGGAGTTGAGGGGTTCCC
CTTGTAGGAAAGCTACAACTGGTTTCAGTGGAAATCTTGGAACAACATCA
AATAATGATGTGCACGAGCTACTTGAGTGTCCCGTTTGCTTGAATTTAAT
GTACCCTCCAATTTACCAGTGTCCAAATGGTCACACCTTGTGCTCAAGTT
GCAAGGCTAGAGTACGCACCGGTTGTCCAACCTGCCGCCATGAACTTGGA
AATATAAGGTGCCTGGCATTGGAGAAAGTAGCTGAGTCGCTGGAACTCCC
TTGCAGATACCAGATTTGGGGTTGTCAAGATATATTCCCCTATTACAGCA
AGCTAAAGCATGAAAAAACTGTAACTATCGTCCGTACAATTGCCCCTA
back to top