FC923862

Overview
NameFC923862
Unique NameFC923862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923862 vs. ExPASy Swiss-Prot
Match: SNX7_MOUSE (Sorting nexin-7 OS=Mus musculus GN=Snx7 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.295e-22
Identity = 61/161 (37.89%), Postives = 92/161 (57.14%), Query Frame = 2
Query:  122 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF--RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVE 598
            L ++V  P      ++ +I+YR++TKT+  E+   E  V RRY DF+WL+ +L E +  + IPPLPEK  V+    RF+ +FIE RR+ L  F+NRIA HP L  +ED K FL A  E +       + Y K+ P  L ++ + V++  S +   K +P E
Sbjct:   32 LFITVDAPESHVTTIETFITYRIVTKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKVFLTAQAEEL-------SSYKKQGPGLLSRMGQTVRAVASSMRGVKNRPEE 185          
BLAST of FC923862 vs. ExPASy Swiss-Prot
Match: SNX7_MACFA (Sorting nexin-7 OS=Macaca fascicularis GN=SNX7 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.124e-21
Identity = 61/164 (37.20%), Postives = 91/164 (55.49%), Query Frame = 2
Query:  122 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF--RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESN 607
            L ++V +P      ++ +I+YR+ITKT+  E+   E  V RRY DF+WL+ +L E +  + IPPLPEK  V+    RF+ +FIE RR+ L  F+NRIA HP L  +ED K FL A    +   + Q  G   +    + Q  + V S +  V    E+ +E +N
Sbjct:   32 LFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAWELSSHKKQGPGLLSR----MGQTVRAVASSMRGVKNRPEEFMEMNN 191          
BLAST of FC923862 vs. ExPASy Swiss-Prot
Match: SNX7_HUMAN (Sorting nexin-7 OS=Homo sapiens GN=SNX7 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.124e-21
Identity = 61/164 (37.20%), Postives = 91/164 (55.49%), Query Frame = 2
Query:  122 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF--RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESN 607
            L ++V +P      ++ +I+YR+ITKT+  E+   E  V RRY DF+WL+ +L E +  + IPPLPEK  V+    RF+ +FIE RR+ L  F+NRIA HP L  +ED K FL A    +   + Q  G   +    + Q  + V S +  V    E+ +E +N
Sbjct:   32 LFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAWELSSHKKQGPGLLSR----MGQTVRAVASSMRGVKNRPEEFMEMNN 191          
BLAST of FC923862 vs. ExPASy Swiss-Prot
Match: SNX30_XENTR (Sorting nexin-30 OS=Xenopus tropicalis GN=snx30 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.329e-21
Identity = 57/117 (48.72%), Postives = 71/117 (60.68%), Query Frame = 2
Query:  122 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF--RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 466
            L V+V DP K    ++ YI+YRV TKT   E+  PE  + RRY DF WLR++L E     FIPPLPEK  V+    RFS EF+E RR+ LD F+ RIA HP L  +E    FL A +
Sbjct:  100 LFVTVDDPKKHVCTMETYITYRVSTKTTRTEFDLPEYSIRRRYQDFDWLRNKLEETQPTHFIPPLPEKFVVKGVVDRFSEEFVETRRKALDKFLKRIADHPVLSFNEHFNVFLTAKD 216          
BLAST of FC923862 vs. ExPASy Swiss-Prot
Match: SNX1_PONAB (Sorting nexin-1 OS=Pongo abelii GN=SNX1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.187e-20
Identity = 49/125 (39.20%), Postives = 81/125 (64.80%), Query Frame = 2
Query:  122 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--KGIFIPPLPEKSAV--------EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 466
            L+V +TDP K+G+G+ AY++Y+V T+T+ P ++  +  V RR+SDF+ L ++L EK+   G  +PP PEKS +        ++   SAEF+E RR  L+ ++ RI +HP + Q  D++ FL+ +E
Sbjct:  145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYIQRIVNHPTMLQDPDVREFLEKEE 269          
BLAST of FC923862 vs. ExPASy Swiss-Prot
Match: SNX30_XENLA (Sorting nexin-30 OS=Xenopus laevis GN=snx30 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.025e-20
Identity = 57/117 (48.72%), Postives = 70/117 (59.83%), Query Frame = 2
Query:  122 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF--RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 466
            L V+V DP K    ++ YI+Y V TKT   E+  PE  V RRY DF WLR++L E     FIPPLPEK  V+    RFS EF+E RR+ LD F+ RIA HP L  +E    FL A +
Sbjct:  106 LFVTVDDPKKHVCTMETYITYSVSTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEETQPTHFIPPLPEKFVVKGVVDRFSEEFVETRRKALDKFLKRIADHPVLSFNEHFNVFLTAKD 222          
BLAST of FC923862 vs. ExPASy Swiss-Prot
Match: SNX1_RAT (Sorting nexin-1 OS=Rattus norvegicus GN=Snx1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.025e-20
Identity = 49/125 (39.20%), Postives = 81/125 (64.80%), Query Frame = 2
Query:  122 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--KGIFIPPLPEKSAV--------EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 466
            L+V +TDP K+G+G+ AY++Y+V T+T+ P ++  +  V RR+SDF+ L ++L EK+   G  +PP PEKS +        ++   SAEF+E RR  L+ ++ RI +HP + Q  D++ FL+ +E
Sbjct:  145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSRQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEE 269          
BLAST of FC923862 vs. ExPASy Swiss-Prot
Match: SNX1_MOUSE (Sorting nexin-1 OS=Mus musculus GN=Snx1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.025e-20
Identity = 49/125 (39.20%), Postives = 81/125 (64.80%), Query Frame = 2
Query:  122 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--KGIFIPPLPEKSAV--------EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 466
            L+V +TDP K+G+G+ AY++Y+V T+T+ P ++  +  V RR+SDF+ L ++L EK+   G  +PP PEKS +        ++   SAEF+E RR  L+ ++ RI +HP + Q  D++ FL+ +E
Sbjct:  145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSRQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEE 269          
BLAST of FC923862 vs. ExPASy Swiss-Prot
Match: SNX1_MACFA (Sorting nexin-1 OS=Macaca fascicularis GN=SNX1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.025e-20
Identity = 49/125 (39.20%), Postives = 81/125 (64.80%), Query Frame = 2
Query:  122 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--KGIFIPPLPEKSAV--------EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 466
            L+V +TDP K+G+G+ AY++Y+V T+T+ P ++  +  V RR+SDF+ L ++L EK+   G  +PP PEKS +        ++   SAEF+E RR  L+ ++ RI +HP + Q  D++ FL+ +E
Sbjct:  145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEE 269          
BLAST of FC923862 vs. ExPASy Swiss-Prot
Match: SNX1_HUMAN (Sorting nexin-1 OS=Homo sapiens GN=SNX1 PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 2.025e-20
Identity = 49/125 (39.20%), Postives = 81/125 (64.80%), Query Frame = 2
Query:  122 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--KGIFIPPLPEKSAV--------EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 466
            L+V +TDP K+G+G+ AY++Y+V T+T+ P ++  +  V RR+SDF+ L ++L EK+   G  +PP PEKS +        ++   SAEF+E RR  L+ ++ RI +HP + Q  D++ FL+ +E
Sbjct:  145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEE 269          
The following BLAST results are available for this feature:
BLAST of FC923862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
SNX7_MOUSE6.295e-2237.89Sorting nexin-7 OS=Mus musculus GN=Snx7 PE=2 SV=1[more]
SNX7_MACFA3.124e-2137.20Sorting nexin-7 OS=Macaca fascicularis GN=SNX7 PE=... [more]
SNX7_HUMAN3.124e-2137.20Sorting nexin-7 OS=Homo sapiens GN=SNX7 PE=1 SV=1[more]
SNX30_XENTR5.329e-2148.72Sorting nexin-30 OS=Xenopus tropicalis GN=snx30 PE... [more]
SNX1_PONAB1.187e-2039.20Sorting nexin-1 OS=Pongo abelii GN=SNX1 PE=2 SV=1[more]
SNX30_XENLA2.025e-2048.72Sorting nexin-30 OS=Xenopus laevis GN=snx30 PE=2 S... [more]
SNX1_RAT2.025e-2039.20Sorting nexin-1 OS=Rattus norvegicus GN=Snx1 PE=1 ... [more]
SNX1_MOUSE2.025e-2039.20Sorting nexin-1 OS=Mus musculus GN=Snx1 PE=1 SV=1[more]
SNX1_MACFA2.025e-2039.20Sorting nexin-1 OS=Macaca fascicularis GN=SNX1 PE=... [more]
SNX1_HUMAN2.025e-2039.20Sorting nexin-1 OS=Homo sapiens GN=SNX1 PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC31709F12EF StrClemenN Citrus clementina cDNA clone C31709F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923862 ID=FC923862; Name=FC923862; organism=Citrus clementina; type=EST; length=610bp
GAATCCTTCTTCTTCCGTTCTTCGGTTCCATTCTCTAGTTCCCAATTAGA
TCATGATTAACACGCAGAGAAGCGCATCCGGATCGTCGCAGAGCCCTAGA
TCCCCGTCATCGCAGCCGTATTTATCGGTGTCAGTAACCGATCCCGTGAA
ATTAGGCAATGGAGTACAAGCTTACATTTCCTATCGAGTCATCACCAAGA
CAAATTTTCCTGAATATCAAGGCCCCGAGAAGATTGTTATTCGCCGTTAC
AGTGATTTTGTCTGGTTACGTGATCGACTTTTTGAGAAGTACAAGGGCAT
TTTCATTCCCCCTCTTCCTGAGAAGAGTGCCGTAGAGAAGTTTCGTTTCA
GTGCTGAATTTATTGAGATGAGACGCCAAGGATTGGATTTGTTTGTCAAT
CGGATTGCTTCACATCCTGAGCTGCAGCAAAGTGAGGATTTAAAAACATT
TTTGCAGGCAGACGAAGAGACAATGGAGAGATTAAGGTCTCAAGACACTG
GTTATTTCAAAAAGAAGCCAGCTGATTTGATGCAAATCTTCAAGGATGTA
CAATCTAAAGTGAGTGATGTNGTTCTTGGAAAAGAGAAGCCAGTTGAAGA
ATCTAATCCT
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