FC925012
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925012 vs. ExPASy Swiss-Prot
Match: IMP3_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus GN=Imp3 PE=2 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 3.515e-47 Identity = 86/166 (51.81%), Postives = 124/166 (74.70%), Query Frame = 1 Query: 103 VNFLEWK-REGGHREAMIMQRYHVTGRDDYKKYSSLCGMVQNLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHVREAVTYIEHGHIRVGPETVTDPAFLVTGNMEDFITWVDTSKIKRKVLEYNDKVDDYD 597 V+FL W+ + E +++RY + R++Y +Y+ L V+ L L+ + RDPFR+ + LL+KLY MG++P+R SL LCD +S SSFCRRRL T+L++L+ A+H++ AV ++E GH+RVGP+ VTDPAFLVT +MEDF+TWVD+SKIKR VLEYN++ DD+D Sbjct: 16 VDFLNWEVTDHNLHELRVLRRYRLQRREEYTRYNQLSRAVRELARRLRDLPERDPFRVRASAALLDKLYAMGLVPTRGSLELCDSVSASSFCRRRLPTLLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181
BLAST of FC925012 vs. ExPASy Swiss-Prot
Match: IMP3_YEAST (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae GN=IMP3 PE=1 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 1.023e-46 Identity = 82/166 (49.40%), Postives = 123/166 (74.10%), Query Frame = 1 Query: 103 VNFLEWKREGGHREAMIMQRYHVTGRDDYKKYSSLCGMVQNLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLA-LCDHLSVSSFCRRRLATILVRLKFAEHVREAVTYIEHGHIRVGPETVTDPAFLVTGNMEDFITWVDTSKIKRKVLEYNDKVDDYD 597 V+FLEWK++ GHR+ +M+ YH+ R+DY KY+ +CG ++ L N L + P DPFR + +LL+KLY MGV+ ++ ++ L + ++VS+ CRRRL I+ RLK AE +++AV +IE GH+RVGP + DPA+LVT NMED++TWVD SKIK+ +L Y +++DD+D Sbjct: 16 VDFLEWKQDQGHRDTQVMRTYHIQNREDYHKYNRICGDIRRLANKLSLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNMEDYVTWVDNSKIKKTLLRYRNQIDDFD 181
BLAST of FC925012 vs. ExPASy Swiss-Prot
Match: IMP3_SCHPO (U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe GN=imp3 PE=2 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 2.278e-46 Identity = 81/169 (47.93%), Postives = 127/169 (75.15%), Query Frame = 1 Query: 103 VNFLEWKRE-GGHREAMIMQRYHVTGRDDYKKYSSLCGMVQNLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDH-LSVSSFCRRRLATILVRLKFAEHVREAVTYIEHGHIRVGPETVTDPAFLVTGNMEDFITWVDTSKIKRKVLEYNDKVDDYDAM 603 V+FL +K + HR+ M+M+RYH++ R++Y+KY+ +CG + L + L +DP DPFR++ ++LLEKL++MG++PS+ ++ ++ +VS+ CRRRL I+ +L+ ++ V EA IE GH+RVGP +TDPA+LVT ++EDF+TW DTSKIKR + +YNDK+DDYD + Sbjct: 15 VDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPAYLVTRSLEDFVTWTDTSKIKRTIAKYNDKLDDYDLL 183
BLAST of FC925012 vs. ExPASy Swiss-Prot
Match: IMP3_BOVIN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus GN=IMP3 PE=2 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 2.278e-46 Identity = 84/166 (50.60%), Postives = 123/166 (74.10%), Query Frame = 1 Query: 103 VNFLEWK-REGGHREAMIMQRYHVTGRDDYKKYSSLCGMVQNLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHVREAVTYIEHGHIRVGPETVTDPAFLVTGNMEDFITWVDTSKIKRKVLEYNDKVDDYD 597 V+FL W+ + E +++RY + R+DY +Y+ L V+ L L+ + RDPFR+ + LL+KLY +G++P+R S LCD ++ SSFCRRRL T+L++L+ A+H++ AV ++E GH+RVGP+ VTDPAFLVT +MEDF+TWVD+SKIKR VLEYN++ DD+D Sbjct: 16 VDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDPFRVRSSAALLDKLYALGLVPTRGSQELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181
BLAST of FC925012 vs. ExPASy Swiss-Prot
Match: IMP3_HUMAN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens GN=IMP3 PE=1 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 3.886e-46 Identity = 84/166 (50.60%), Postives = 123/166 (74.10%), Query Frame = 1 Query: 103 VNFLEWK-REGGHREAMIMQRYHVTGRDDYKKYSSLCGMVQNLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHVREAVTYIEHGHIRVGPETVTDPAFLVTGNMEDFITWVDTSKIKRKVLEYNDKVDDYD 597 V+FL W+ + E +++RY + R+DY +Y+ L V+ L L+ + RD FR+ + LL+KLY +G++P+R SL LCD ++ SSFCRRRL T+L++L+ A+H++ AV ++E GH+RVGP+ VTDPAFLVT +MEDF+TWVD+SKIKR VLEYN++ DD+D Sbjct: 16 VDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181
BLAST of FC925012 vs. ExPASy Swiss-Prot
Match: YS4L_PNECA (Putative 40S ribosomal protein S4-like (Fragment) OS=Pneumocystis carinii GN=RBP PE=3 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.636e-36 Identity = 73/153 (47.71%), Postives = 107/153 (69.93%), Query Frame = 1 Query: 106 NFLEWKRE-GGHREAMIMQRYHVTGRDDYKKYSSLCGMVQNLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDH-LSVSSFCRRRLATILVRLKFAEHVREAVTYIEHGHIRVGPETVTDPAFLVTGNMEDFITWVDTSKIKR 558 +FL +K++ HR+ +++RYH+ R+DY KY+ L G++ + N L ++P D F MLL KL++M ++ S L+ ++ L+VS+FCRRRL ++ RLK E V +V Y+EHGH+RVGPE +TDPAF VT NMEDF+TWVD+SKI+R Sbjct: 16 DFLNYKKDDNNHRDVNVIRRYHIPQREDYFKYNQLVGLLLGIANKLSLLEPTDSFGNLHKKMLLGKLFDMALLTSTPKLSDVENKLTVSAFCRRRLPVVMCRLKMCETVSTSVKYVEHGHVRVGPEVITDPAFFVTRNMEDFVTWVDSSKIRR 168
BLAST of FC925012 vs. ExPASy Swiss-Prot
Match: YS4L_CAEEL (Putative 40S ribosomal protein S4-like OS=Caenorhabditis elegans GN=C48B6.2 PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.483e-29 Identity = 57/167 (34.13%), Postives = 104/167 (62.28%), Query Frame = 1 Query: 106 NFLEWKREGGHREAMIMQRYHVTGRDDYKKYSSLCGMVQNLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHVREAVTYIEHGHIRVGPETVTDPAFLVTGNMEDFITWVDTSKIKRKVLEYNDKVDDYDAMN 606 +F+ W+ + ++ ++++++V R+ Y Y++L + + +++K + DPFR + T+ +L K Y G++P+ +L ++ +SF RRRL ++ + E V+ A +E GH+R+G + VTDPAF+VT + ED ITW SKIK+ V++YN+ DD+D M+ Sbjct: 17 DFMSWQVDQQGKQGDMLRKFYVKKREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGKVTGASFARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKASKIKKHVMDYNNTRDDFDLMD 183 The following BLAST results are available for this feature:
BLAST of FC925012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC925012 ID=FC925012; Name=FC925012; organism=Citrus clementina; type=EST; length=731bpback to top |