FC925096

Overview
NameFC925096
Unique NameFC925096
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length831
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig641 contig Ccv1_Contig641:122..952. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925096 vs. ExPASy Swiss-Prot
Match: PSB4_ARATH (Proteasome subunit beta type-4 OS=Arabidopsis thaliana GN=PBG1 PE=1 SV=2)

HSP 1 Score: 405.986 bits (1042), Expect = 1.341e-112
Identity = 189/225 (84.00%), Postives = 212/225 (94.22%), Query Frame = 1
Query:   82 QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPTAGAEGSW 756
            QRT  PYVTGTS+VA+KYKDG+LMA+DMGGSYGST+RYK++ER+K IGKHSLLGASGEISDFQE+LR LDEL L DNMWDDGNSLGPKE+H+YLTRVMYNRRNKF+PLWN+LVLGGVKNG+ YLGMVSMIGV+FED HVATGFGNHLARPILRDEWH +LS+EDGVKLLEKCMRVLLYRDRSA+NKLQIAKITEEG T+SQPY+LKT+W F++F NPTAGA GSW
Sbjct:   22 QRTLYPYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEISDFQEILRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKNGKSYLGMVSMIGVSFEDDHVATGFGNHLARPILRDEWHADLSFEDGVKLLEKCMRVLLYRDRSAINKLQIAKITEEGVTVSQPYSLKTYWEFSSFHNPTAGAAGSW 246          
BLAST of FC925096 vs. ExPASy Swiss-Prot
Match: PSB4_BOVIN (Proteasome subunit beta type-4 OS=Bos taurus GN=PSMB4 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.080e-53
Identity = 100/213 (46.95%), Postives = 152/213 (71.36%), Query Frame = 1
Query:   76 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 708
            PI RTQ P VTGTSV+ LK++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + +  DG+S  PK +HS+LTR MY+RR+K +PLWN++V+GG  +G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +  +L+E+CMRVL YRD  + N+ QIA +TE+G  I  P + +T W
Sbjct:   42 PITRTQNPMVTGTSVLGLKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRDARSYNRFQIATVTEKGVEIEGPLSAETNW 254          
BLAST of FC925096 vs. ExPASy Swiss-Prot
Match: PSB4_HUMAN (Proteasome subunit beta type-4 OS=Homo sapiens GN=PSMB4 PE=1 SV=4)

HSP 1 Score: 207.223 bits (526), Expect = 9.143e-53
Identity = 98/213 (46.01%), Postives = 151/213 (70.89%), Query Frame = 1
Query:   76 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 708
            PI RTQ P VTGTSV+ +K++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + +  DG+S  P+ +HS+LTR MY+RR+K +PLWN++V+GG  +G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +   L+E+CMRVL YRD  + N+ QIA +TE+G  I  P + +T W
Sbjct:   42 PITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQIATVTEKGVEIEGPLSTETNW 254          
BLAST of FC925096 vs. ExPASy Swiss-Prot
Match: PSB4_MOUSE (Proteasome subunit beta type-4 OS=Mus musculus GN=Psmb4 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.194e-52
Identity = 98/213 (46.01%), Postives = 151/213 (70.89%), Query Frame = 1
Query:   76 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 708
            PI RTQ P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + +  DG+S  P+ +HS+LTR MY+RR+K +PLWN++V+GG  +G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +  +L+E+CMRVL YRD  + N+ QIA +TE+G  I  P + +T W
Sbjct:   42 PITRTQNPMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRDARSYNRFQIATVTEKGVEIEGPLSAQTNW 254          
BLAST of FC925096 vs. ExPASy Swiss-Prot
Match: PSB4_RAT (Proteasome subunit beta type-4 OS=Rattus norvegicus GN=Psmb4 PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 2.037e-52
Identity = 98/216 (45.37%), Postives = 151/216 (69.91%), Query Frame = 1
Query:   67 PNDPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 708
            P  PI RTQ P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + ++ DG+S  P+ +HS+LTR MY+RR+K +PLWN+ V+GG   G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +  +L+E+CMRVL YRD  + N+ Q+A +TE+G  I  P + +T W
Sbjct:   38 PARPITRTQNPMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQVLGQMVIDEELFGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTKVIGGYAGGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRDARSYNRFQVATVTEKGVEIEGPLSAQTNW 253          
BLAST of FC925096 vs. ExPASy Swiss-Prot
Match: PSB4_XENLA (Proteasome subunit beta type-4 (Fragment) OS=Xenopus laevis GN=psmb4 PE=2 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 3.474e-52
Identity = 93/213 (43.66%), Postives = 152/213 (71.36%), Query Frame = 1
Query:   76 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 708
            P++ T  P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  + ++++LGASG+ +D+Q L + +D++++ + +  DG++  PK +HS+LTRVMYNRR+K +PLWN++V+GG  NG+ +LG V  +GV +E   +ATGFG +LA+P+LR+  E    LS E+  +L+++CM+VL YRD  + N+ +I  +TE G  +  P + +T W
Sbjct:   20 PVRHTLNPMVTGTSVLGVKFDGGVIIAADMLGSYGSLARFRNISRIMKVNENTILGASGDYADYQYLKQVIDQMVIDEELVGDGHNYSPKAIHSWLTRVMYNRRSKMNPLWNTVVIGGFYNGESFLGYVDKLGVAYEAPTIATGFGAYLAQPLLREVTENKATLSKEEARQLVDRCMKVLYYRDARSYNRFEITTVTESGVEVEGPLSSETNW 232          
BLAST of FC925096 vs. ExPASy Swiss-Prot
Match: PSB4_DICDI (Proteasome subunit beta type-4 OS=Dictyostelium discoideum GN=psmB4-1 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.236e-49
Identity = 95/210 (45.24%), Postives = 143/210 (68.10%), Query Frame = 1
Query:   82 QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHE--NLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTF 705
            Q+T  P VTGTSV+A+KY  G++M +DM  SYGS  R+ S ER+K  G ++++GASGE SDFQ +   L++L+  D+  DDG+ L  +E+ +YL RV+YN+RN+ +PLWN+LV+ G + G+ +LG V ++G  ++D  + TG+G+H+A P+LR    E  N++ E   +L++ C+RVL YRD  +  K+QI+   EEG  IS P  L TF
Sbjct:   35 QKTLDPIVTGTSVIAIKYDKGVVMGSDMLLSYGSLARFNSTERMKKFGGYTIVGASGEYSDFQSITNTLNDLVTDDHCMDDGSKLSSEEIWNYLARVLYNQRNRGNPLWNTLVVMGYQGGKSFLGKVDLVGTCYKDDIITTGYGSHIALPLLRKARDENPNMNLEQAKQLIQDCLRVLFYRDARSSKKIQISVAGEEGIEISGPIELDTF 244          
BLAST of FC925096 vs. ExPASy Swiss-Prot
Match: PSB4_SCHPO (Probable proteasome subunit beta type-4 OS=Schizosaccharomyces pombe GN=SPBC577.10 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.670e-46
Identity = 94/224 (41.96%), Postives = 140/224 (62.50%), Query Frame = 1
Query:   76 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV--KNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILR-----DEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQ 726
            PIQRT  P VTG+SV+ALK+ DG+++AAD   SYGS  R+  VER+  +G ++++GA G+ISD+Q++ R L++L + +  + DG +L P  +H YL++V+Y RRNK DP WN L++ GV  +N + Y+    + G  +    +ATGF  HLA P+LR     D W + LS E     +++CMRVL YRD  ++NK  +A IT EG       ++ + W F   Q
Sbjct:   32 PIQRTVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQIQRLLEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAFADLRGTTYSAPAIATGFAMHLALPMLRKATDDDRW-KTLSKESARATIDECMRVLFYRDARSLNKFSVATITPEGIEFQTDQSVSSKWAFAEKQ 254          
BLAST of FC925096 vs. ExPASy Swiss-Prot
Match: PSB4_DROME (Proteasome subunit beta type-4 OS=Drosophila melanogaster GN=Prosbeta7 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.674e-38
Identity = 79/206 (38.35%), Postives = 129/206 (62.62%), Query Frame = 1
Query:  106 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYE--DGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGF 714
            TGTSV+ ++Y  G+++AAD   SYGS  RY+++ER+  + K+ LLG SG+ +D Q + RN+D+ ++ D   DD   + PK L S++TRV+YNRR++ +PL+  +V+GGV N G  YL  V + G ++ED  VATGF  HLA P++R++  ++  +   +  +L+  CM VL YRD   +++  +   +  G  +  P+ +   W F
Sbjct:   56 TGTSVLGIRYDSGVMLAADTLVSYGSMARYQNIERVFKVNKNILLGGSGDFADIQSIKRNIDQKMIEDQCCDDNIEMKPKSLASWMTRVLYNRRSRMNPLYIDVVVGGVDNEGTPYLANVDLRGRSYEDYVVATGFARHLAVPLVREKKPKDRDFTAVEASELIRTCMEVLYYRDTRNISQYTVGVCSVNGCGVEGPFQVNENWTF 261          
BLAST of FC925096 vs. ExPASy Swiss-Prot
Match: PSB4_YEAST (Proteasome component PRE4 OS=Saccharomyces cerevisiae GN=PRE4 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.385e-37
Identity = 86/225 (38.22%), Postives = 136/225 (60.44%), Query Frame = 1
Query:   76 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELI---LYDN-MWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPIL-----RDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE-GTTISQPYALKTF-WGF 714
            P+  TQ P VTGTSV+++KY +G+++AAD  GSYGS +R+  VER+ P+G ++++G SG+ISD Q + R L +L+    YDN + D   +L P  +  YL  VMY RR+K +PLWN++++ GV+ NG ++L  V+++GV +    +ATGFG H+A P+L     R+      + +   + +   MRVL YRD  +     +A I +  G T  +   ++   W F
Sbjct:   30 PMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDF 254          
The following BLAST results are available for this feature:
BLAST of FC925096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PSB4_ARATH1.341e-11284.00Proteasome subunit beta type-4 OS=Arabidopsis thal... [more]
PSB4_BOVIN1.080e-5346.95Proteasome subunit beta type-4 OS=Bos taurus GN=PS... [more]
PSB4_HUMAN9.143e-5346.01Proteasome subunit beta type-4 OS=Homo sapiens GN=... [more]
PSB4_MOUSE1.194e-5246.01Proteasome subunit beta type-4 OS=Mus musculus GN=... [more]
PSB4_RAT2.037e-5245.37Proteasome subunit beta type-4 OS=Rattus norvegicu... [more]
PSB4_XENLA3.474e-5243.66Proteasome subunit beta type-4 (Fragment) OS=Xenop... [more]
PSB4_DICDI1.236e-4945.24Proteasome subunit beta type-4 OS=Dictyostelium di... [more]
PSB4_SCHPO1.670e-4641.96Probable proteasome subunit beta type-4 OS=Schizos... [more]
PSB4_DROME1.674e-3838.35Proteasome subunit beta type-4 OS=Drosophila melan... [more]
PSB4_YEAST5.385e-3738.22Proteasome component PRE4 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YB05FM1 TF Citrus clementina cDNA clone KN0AAP3YB05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925096 ID=FC925096; Name=FC925096; organism=Citrus clementina; type=EST; length=831bp
AGAAAGTGAATCAAATCTCAAAACGAATTAATGGAATCGATCCAAGCCAA
ACAAGGACTTGTCGGCCCTAACGACCCCATTCAAAGAACCCAGTTACCAT
ATGTGACTGGTACATCTGTTGTTGCGCTGAAGTACAAAGATGGCATATTA
ATGGCTGCTGACATGGGAGGTTCCTATGGGTCAACAATCCGATACAAGAG
TGTGGAACGGATTAAACCTATTGGAAAGCATTCTCTACTGGGTGCCAGTG
GAGAAATAAGTGATTTTCAGGAGCTTTTGCGTAATCTTGATGAGCTTATA
CTTTATGACAATATGTGGGATGATGGGAACTCTTTGGGGCCAAAAGAGTT
GCACAGCTATTTGACCAGGGTCATGTATAACAGGCGTAACAAGTTTGATC
CATTGTGGAACTCTCTTGTGCTTGGTGGAGTGAAAAATGGACAGAAATAT
CTTGGCATGGTATCAATGATAGGAGTGAACTTTGAGGACAGCCATGTTGC
AACTGGGTTTGGGAATCATCTTGCAAGGCCAATTCTTCGTGATGAATGGC
ATGAAAACTTGAGTTATGAAGATGGCGTTAAGTTGCTGGAAAAGTGCATG
CGTGTGCTCCTGTATCGTGATAGATCTGCCGTCAACAAGCTGCAGATAGC
AAAGATCACTGAAGAAGGGACAACAATTTCCCAGCCCTACGCATTGAAGA
CGTTCTGGGGATTCACTGCATTCCAGAATCCAACAGCAGGTGCTGAGGGA
TCATGGTAGTTGGCATGAGATAGCTTCTTTCATGTCTCTTTCCCTGTGTT
ACTATGGAGTTTGTAGCTTCTTTCATGTCTT
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