FC925096
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925096 vs. ExPASy Swiss-Prot
Match: PSB4_ARATH (Proteasome subunit beta type-4 OS=Arabidopsis thaliana GN=PBG1 PE=1 SV=2) HSP 1 Score: 405.986 bits (1042), Expect = 1.341e-112 Identity = 189/225 (84.00%), Postives = 212/225 (94.22%), Query Frame = 1 Query: 82 QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPTAGAEGSW 756 QRT PYVTGTS+VA+KYKDG+LMA+DMGGSYGST+RYK++ER+K IGKHSLLGASGEISDFQE+LR LDEL L DNMWDDGNSLGPKE+H+YLTRVMYNRRNKF+PLWN+LVLGGVKNG+ YLGMVSMIGV+FED HVATGFGNHLARPILRDEWH +LS+EDGVKLLEKCMRVLLYRDRSA+NKLQIAKITEEG T+SQPY+LKT+W F++F NPTAGA GSW Sbjct: 22 QRTLYPYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEISDFQEILRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKNGKSYLGMVSMIGVSFEDDHVATGFGNHLARPILRDEWHADLSFEDGVKLLEKCMRVLLYRDRSAINKLQIAKITEEGVTVSQPYSLKTYWEFSSFHNPTAGAAGSW 246
BLAST of FC925096 vs. ExPASy Swiss-Prot
Match: PSB4_BOVIN (Proteasome subunit beta type-4 OS=Bos taurus GN=PSMB4 PE=1 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 1.080e-53 Identity = 100/213 (46.95%), Postives = 152/213 (71.36%), Query Frame = 1 Query: 76 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 708 PI RTQ P VTGTSV+ LK++ G+++AADM GSYGS R++++ RI + ++LGASG+ +DFQ L + L ++++ + + DG+S PK +HS+LTR MY+RR+K +PLWN++V+GG +G+ +LG V M+GV +E +ATG+G +LA+P+LR+ E LS + +L+E+CMRVL YRD + N+ QIA +TE+G I P + +T W Sbjct: 42 PITRTQNPMVTGTSVLGLKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRDARSYNRFQIATVTEKGVEIEGPLSAETNW 254
BLAST of FC925096 vs. ExPASy Swiss-Prot
Match: PSB4_HUMAN (Proteasome subunit beta type-4 OS=Homo sapiens GN=PSMB4 PE=1 SV=4) HSP 1 Score: 207.223 bits (526), Expect = 9.143e-53 Identity = 98/213 (46.01%), Postives = 151/213 (70.89%), Query Frame = 1 Query: 76 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 708 PI RTQ P VTGTSV+ +K++ G+++AADM GSYGS R++++ RI + ++LGASG+ +DFQ L + L ++++ + + DG+S P+ +HS+LTR MY+RR+K +PLWN++V+GG +G+ +LG V M+GV +E +ATG+G +LA+P+LR+ E LS + L+E+CMRVL YRD + N+ QIA +TE+G I P + +T W Sbjct: 42 PITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQIATVTEKGVEIEGPLSTETNW 254
BLAST of FC925096 vs. ExPASy Swiss-Prot
Match: PSB4_MOUSE (Proteasome subunit beta type-4 OS=Mus musculus GN=Psmb4 PE=1 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 1.194e-52 Identity = 98/213 (46.01%), Postives = 151/213 (70.89%), Query Frame = 1 Query: 76 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 708 PI RTQ P VTGTSV+ +K+ G+++AADM GSYGS R++++ RI + ++LGASG+ +DFQ L + L ++++ + + DG+S P+ +HS+LTR MY+RR+K +PLWN++V+GG +G+ +LG V M+GV +E +ATG+G +LA+P+LR+ E LS + +L+E+CMRVL YRD + N+ QIA +TE+G I P + +T W Sbjct: 42 PITRTQNPMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRDARSYNRFQIATVTEKGVEIEGPLSAQTNW 254
BLAST of FC925096 vs. ExPASy Swiss-Prot
Match: PSB4_RAT (Proteasome subunit beta type-4 OS=Rattus norvegicus GN=Psmb4 PE=1 SV=2) HSP 1 Score: 206.068 bits (523), Expect = 2.037e-52 Identity = 98/216 (45.37%), Postives = 151/216 (69.91%), Query Frame = 1 Query: 67 PNDPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 708 P PI RTQ P VTGTSV+ +K+ G+++AADM GSYGS R++++ RI + ++LGASG+ +DFQ L + L ++++ + ++ DG+S P+ +HS+LTR MY+RR+K +PLWN+ V+GG G+ +LG V M+GV +E +ATG+G +LA+P+LR+ E LS + +L+E+CMRVL YRD + N+ Q+A +TE+G I P + +T W Sbjct: 38 PARPITRTQNPMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQVLGQMVIDEELFGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTKVIGGYAGGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRDARSYNRFQVATVTEKGVEIEGPLSAQTNW 253
BLAST of FC925096 vs. ExPASy Swiss-Prot
Match: PSB4_XENLA (Proteasome subunit beta type-4 (Fragment) OS=Xenopus laevis GN=psmb4 PE=2 SV=2) HSP 1 Score: 205.297 bits (521), Expect = 3.474e-52 Identity = 93/213 (43.66%), Postives = 152/213 (71.36%), Query Frame = 1 Query: 76 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 708 P++ T P VTGTSV+ +K+ G+++AADM GSYGS R++++ RI + ++++LGASG+ +D+Q L + +D++++ + + DG++ PK +HS+LTRVMYNRR+K +PLWN++V+GG NG+ +LG V +GV +E +ATGFG +LA+P+LR+ E LS E+ +L+++CM+VL YRD + N+ +I +TE G + P + +T W Sbjct: 20 PVRHTLNPMVTGTSVLGVKFDGGVIIAADMLGSYGSLARFRNISRIMKVNENTILGASGDYADYQYLKQVIDQMVIDEELVGDGHNYSPKAIHSWLTRVMYNRRSKMNPLWNTVVIGGFYNGESFLGYVDKLGVAYEAPTIATGFGAYLAQPLLREVTENKATLSKEEARQLVDRCMKVLYYRDARSYNRFEITTVTESGVEVEGPLSSETNW 232
BLAST of FC925096 vs. ExPASy Swiss-Prot
Match: PSB4_DICDI (Proteasome subunit beta type-4 OS=Dictyostelium discoideum GN=psmB4-1 PE=3 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 1.236e-49 Identity = 95/210 (45.24%), Postives = 143/210 (68.10%), Query Frame = 1 Query: 82 QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHE--NLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTF 705 Q+T P VTGTSV+A+KY G++M +DM SYGS R+ S ER+K G ++++GASGE SDFQ + L++L+ D+ DDG+ L +E+ +YL RV+YN+RN+ +PLWN+LV+ G + G+ +LG V ++G ++D + TG+G+H+A P+LR E N++ E +L++ C+RVL YRD + K+QI+ EEG IS P L TF Sbjct: 35 QKTLDPIVTGTSVIAIKYDKGVVMGSDMLLSYGSLARFNSTERMKKFGGYTIVGASGEYSDFQSITNTLNDLVTDDHCMDDGSKLSSEEIWNYLARVLYNQRNRGNPLWNTLVVMGYQGGKSFLGKVDLVGTCYKDDIITTGYGSHIALPLLRKARDENPNMNLEQAKQLIQDCLRVLFYRDARSSKKIQISVAGEEGIEISGPIELDTF 244
BLAST of FC925096 vs. ExPASy Swiss-Prot
Match: PSB4_SCHPO (Probable proteasome subunit beta type-4 OS=Schizosaccharomyces pombe GN=SPBC577.10 PE=2 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.670e-46 Identity = 94/224 (41.96%), Postives = 140/224 (62.50%), Query Frame = 1 Query: 76 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV--KNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILR-----DEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQ 726 PIQRT P VTG+SV+ALK+ DG+++AAD SYGS R+ VER+ +G ++++GA G+ISD+Q++ R L++L + + + DG +L P +H YL++V+Y RRNK DP WN L++ GV +N + Y+ + G + +ATGF HLA P+LR D W + LS E +++CMRVL YRD ++NK +A IT EG ++ + W F Q Sbjct: 32 PIQRTVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQIQRLLEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAFADLRGTTYSAPAIATGFAMHLALPMLRKATDDDRW-KTLSKESARATIDECMRVLFYRDARSLNKFSVATITPEGIEFQTDQSVSSKWAFAEKQ 254
BLAST of FC925096 vs. ExPASy Swiss-Prot
Match: PSB4_DROME (Proteasome subunit beta type-4 OS=Drosophila melanogaster GN=Prosbeta7 PE=1 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.674e-38 Identity = 79/206 (38.35%), Postives = 129/206 (62.62%), Query Frame = 1 Query: 106 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYE--DGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGF 714 TGTSV+ ++Y G+++AAD SYGS RY+++ER+ + K+ LLG SG+ +D Q + RN+D+ ++ D DD + PK L S++TRV+YNRR++ +PL+ +V+GGV N G YL V + G ++ED VATGF HLA P++R++ ++ + + +L+ CM VL YRD +++ + + G + P+ + W F Sbjct: 56 TGTSVLGIRYDSGVMLAADTLVSYGSMARYQNIERVFKVNKNILLGGSGDFADIQSIKRNIDQKMIEDQCCDDNIEMKPKSLASWMTRVLYNRRSRMNPLYIDVVVGGVDNEGTPYLANVDLRGRSYEDYVVATGFARHLAVPLVREKKPKDRDFTAVEASELIRTCMEVLYYRDTRNISQYTVGVCSVNGCGVEGPFQVNENWTF 261
BLAST of FC925096 vs. ExPASy Swiss-Prot
Match: PSB4_YEAST (Proteasome component PRE4 OS=Saccharomyces cerevisiae GN=PRE4 PE=1 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 5.385e-37 Identity = 86/225 (38.22%), Postives = 136/225 (60.44%), Query Frame = 1 Query: 76 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELI---LYDN-MWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPIL-----RDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE-GTTISQPYALKTF-WGF 714 P+ TQ P VTGTSV+++KY +G+++AAD GSYGS +R+ VER+ P+G ++++G SG+ISD Q + R L +L+ YDN + D +L P + YL VMY RR+K +PLWN++++ GV+ NG ++L V+++GV + +ATGFG H+A P+L R+ + + + + MRVL YRD + +A I + G T + ++ W F Sbjct: 30 PMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDF 254 The following BLAST results are available for this feature:
BLAST of FC925096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925096 ID=FC925096; Name=FC925096; organism=Citrus clementina; type=EST; length=831bpback to top |