FC925225

Overview
NameFC925225
Unique NameFC925225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14611 contig Ccv1_Contig14611:1..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.974e-32
Identity = 60/119 (50.42%), Postives = 76/119 (63.87%), Query Frame = 3
Query:  201 KRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            K+ CNS +    E+R+GPWT+EED +L +YI  HGEG WN +A+ AG                             LKRTGKSCRLRWLNYL+PD++RGN+TP+EQ LI+ELH+KWGNR
Sbjct:    3 KKPCNSQDV---EVRKGPWTMEEDLILINYIANHGEGVWNSLARSAG-----------------------------LKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNR 89          

HSP 2 Score: 35.8094 bits (81), Expect = 1.974e-32
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 1
Query:  667 RWSKIAQCLPGRTDNEI 717
            RWSKIA+ LPGRTDNEI
Sbjct:   89 RWSKIAKTLPGRTDNEI 105          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.682e-32
Identity = 59/119 (49.58%), Postives = 76/119 (63.87%), Query Frame = 3
Query:  201 KRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            K+ CNS +    E+R+GPWT+EED +L ++I  HGEG WN +A+ AG                             LKRTGKSCRLRWLNYL+PD++RGN+TP+EQ LI+ELH+KWGNR
Sbjct:    3 KKPCNSHDV---EVRKGPWTMEEDLILINFISNHGEGVWNTIARSAG-----------------------------LKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNR 89          

HSP 2 Score: 35.039 bits (79), Expect = 5.682e-32
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 1
Query:  667 RWSKIAQCLPGRTDNEI 717
            RWSKIA+ LPGRTDNEI
Sbjct:   89 RWSKIAKHLPGRTDNEI 105          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 7.585e-28
Identity = 52/109 (47.71%), Postives = 67/109 (61.47%), Query Frame = 3
Query:  231 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            Q+E R+GPWT +ED LL +++H  G+ RW+ VAK                             +SGL RTGKSCRLRW+NYL P +KRG +TPQE+ L+LELH+KWGNR
Sbjct:    5 QEEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAK-----------------------------VSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNR 84          

HSP 2 Score: 35.039 bits (79), Expect = 7.585e-28
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 1
Query:  667 RWSKIAQCLPGRTDNEI 717
            RWSKIA+ LPGRTDNEI
Sbjct:   84 RWSKIARKLPGRTDNEI 100          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.915e-27
Identity = 60/124 (48.39%), Postives = 76/124 (61.29%), Query Frame = 3
Query:  186 RAAGTKRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            R  G+     SS E   E+R+GPWT+EED +L +YI  HG+G WN +AK AG                             LKRTGKSCRLRWLNYL+PD++RGN+TP+EQ +I+ELH+KWGNR
Sbjct:    4 RGGGSSGGSGSSAE--AEVRKGPWTMEEDLILINYIANHGDGVWNSLAKSAG-----------------------------LKRTGKSCRLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNR 96          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.793e-26
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 3
Query:  243 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            R+GPWT +ED LL +++H  G+ RW+ +AK                             +SGL RTGKSCRLRW+NYL P +KRG +TPQE+ L+LELH+KWGNR
Sbjct:    8 RKGPWTEQEDILLVNFVHLFGDRRWDFIAK-----------------------------VSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNR 83          

HSP 2 Score: 35.039 bits (79), Expect = 1.793e-26
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 1
Query:  667 RWSKIAQCLPGRTDNEI 717
            RWSKIA+ LPGRTDNEI
Sbjct:   83 RWSKIARKLPGRTDNEI 99          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYBA2_ORYSJ (Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.002e-23
Identity = 47/109 (43.12%), Postives = 63/109 (57.80%), Query Frame = 3
Query:  231 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            ++E+R+GPWT +ED  L   +   GE RW+ +AK                             +SGL RTGKSCRLRW+NYL P +KRG ++P E+ LILELH++WGNR
Sbjct:    5 REEIRKGPWTEQEDLQLVCTVRLFGERRWDFIAK-----------------------------VSGLNRTGKSCRLRWVNYLHPGLKRGRMSPHEERLILELHARWGNR 84          

HSP 2 Score: 33.8834 bits (76), Expect = 1.002e-23
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 1
Query:  667 RWSKIAQCLPGRTDNEI 717
            RWS+IA+ LPGRTDNEI
Sbjct:   84 RWSRIARRLPGRTDNEI 100          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.311e-23
Identity = 49/119 (41.18%), Postives = 65/119 (54.62%), Query Frame = 3
Query:  201 KRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            K+  +S +E   E ++G WT+EED +L  Y+  HG+G WN +AK                              +GLKR GKSCRLRW+NYL P++KRGN T QE+ LI+ LH   GNR
Sbjct:    3 KKVSSSGDEGNNEYKKGLWTVEEDKILMDYVKAHGKGHWNRIAKK-----------------------------TGLKRCGKSCRLRWMNYLSPNVKRGNFTEQEEDLIIRLHKLLGNR 92          

HSP 2 Score: 31.9574 bits (71), Expect = 1.311e-23
Identity = 14/22 (63.64%), Postives = 19/22 (86.36%), Query Frame = 1
Query:  652 LIGNFRWSKIAQCLPGRTDNEI 717
            L+GN RWS IA+ +PGRTDN++
Sbjct:   88 LLGN-RWSLIAKRVPGRTDNQV 108          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYBA1_ORYSJ (Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.868e-23
Identity = 45/109 (41.28%), Postives = 63/109 (57.80%), Query Frame = 3
Query:  231 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            ++E+R+GPWT +ED  L   +   G+ RW+ VAK                             +SGL RTGKSCRLRW+NYL P +K G ++P+E+ LI+ELH++WGNR
Sbjct:    5 REEMRKGPWTEQEDLQLVCTVRLFGDRRWDFVAK-----------------------------VSGLNRTGKSCRLRWVNYLHPGLKHGRMSPKEEHLIIELHARWGNR 84          

HSP 2 Score: 33.8834 bits (76), Expect = 4.868e-23
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 1
Query:  667 RWSKIAQCLPGRTDNEI 717
            RWS+IA+ LPGRTDNEI
Sbjct:   84 RWSRIARRLPGRTDNEI 100          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.958e-22
Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  240 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            ++RG WT EED +L++YI  +GEG W  + K AG                             LKR GKSCRLRW+NYL+ D+KRGN+TP+E+ L+++LHS  GNR
Sbjct:   12 IKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAG-----------------------------LKRCGKSCRLRWINYLRSDLKRGNITPEEEELVVKLHSTLGNR 88          

HSP 2 Score: 31.9574 bits (71), Expect = 3.958e-22
Identity = 16/21 (76.19%), Postives = 17/21 (80.95%), Query Frame = 1
Query:  655 IGNFRWSKIAQCLPGRTDNEI 717
            +GN RWS IA  LPGRTDNEI
Sbjct:   85 LGN-RWSLIAGHLPGRTDNEI 104          
BLAST of FC925225 vs. ExPASy Swiss-Prot
Match: MYB23_ARATH (Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.828e-22
Identity = 45/109 (41.28%), Postives = 59/109 (54.13%), Query Frame = 3
Query:  231 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 557
            + E ++G WT+EED +L  Y+  HG+G WN +AK                              +GLKR GKSCRLRW+NYL P++ RGN T QE+ LI+ LH   GNR
Sbjct:    9 EHEYKKGLWTVEEDKILMDYVRTHGQGHWNRIAKK-----------------------------TGLKRCGKSCRLRWMNYLSPNVNRGNFTDQEEDLIIRLHKLLGNR 88          

HSP 2 Score: 31.9574 bits (71), Expect = 8.828e-22
Identity = 14/22 (63.64%), Postives = 19/22 (86.36%), Query Frame = 1
Query:  652 LIGNFRWSKIAQCLPGRTDNEI 717
            L+GN RWS IA+ +PGRTDN++
Sbjct:   84 LLGN-RWSLIAKRVPGRTDNQV 104          
The following BLAST results are available for this feature:
BLAST of FC925225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
MYB05_ANTMA1.974e-3250.42Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
MYB40_ANTMA5.682e-3249.58Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
MYB59_ARATH7.585e-2847.71Transcription factor MYB59 OS=Arabidopsis thaliana... [more]
MYB21_ARATH3.915e-2748.39Transcription factor MYB21 OS=Arabidopsis thaliana... [more]
MYB48_ARATH1.793e-2646.67Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MYBA2_ORYSJ1.002e-2343.12Myb-related protein MYBAS2 OS=Oryza sativa subsp. ... [more]
WER_ARATH1.311e-2341.18Transcription factor WER OS=Arabidopsis thaliana G... [more]
MYBA1_ORYSJ4.868e-2341.28Myb-related protein MYBAS1 OS=Oryza sativa subsp. ... [more]
MYB12_ARATH3.958e-2243.40Transcription factor MYB12 OS=Arabidopsis thaliana... [more]
MYB23_ARATH8.828e-2241.28Transcription factor MYB23 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YF20FM1 TF Citrus clementina cDNA clone KN0AAP8YF20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925225 ID=FC925225; Name=FC925225; organism=Citrus clementina; type=EST; length=719bp
TTCTTTTTCCGGTTTTCTGTAGTGTTTGTTTGAACTAGGTAGCTATCCTA
AATGATTGTTTATTATTACTAGCTACCGGTTTCACATTCGCTCTCATTTT
GCCCGTTTCTACTCTCTCGCTTGCTTCTAGCCTTGACCAACAAAAACCTC
GTAGGGACACAAAAATGCACACAATGAGAGCAGCAAGGGCTGCTGGTACA
AAGAGAGAGTGCAATTCCAGTGAAGAAGATCAACAAGAGCTGAGAAGAGG
GCCATGGACTCTTGAAGAAGACACACTTCTTACTCATTACATACATCAAC
ACGGCGAAGGTCGTTGGAATATGGTAGCTAAATGTGCAGGTAACTAAATA
CATGCATAAAAGTTTTTTACATCATGATGTCTGTTATATATGTTAGTTAC
TAAATTGGCCTGACTTATAATTTCAGGACTCAAAAGAACTGGAAAGAGTT
GCAGATTGAGATGGCTAAATTATTTGAAACCCGATATTAAACGCGGGAAC
CTAACTCCGCAGGAGCAGTTCTTGATTCTTGAACTCCATTCTAAGTGGGG
TAACAGGTAAATTAATATCCCTATTATACAGTACAACACTAGAGTCGGAA
TTTTTTTTCTTTTCTTTTGATGAAGTTCTAATCGAATTTAATTATGCGAT
GTTAATTGGCAACTTTAGGTGGTCAAAAATTGCACAATGTCTGCCTGGAA
GAACAGACAATGAAATCAA
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