FC925243
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925243 vs. ExPASy Swiss-Prot
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 8.492e-47 Identity = 95/128 (74.22%), Postives = 104/128 (81.25%), Query Frame = 2 Query: 80 KPAPFTVEKSAARGLPSL--AKTSFKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 454 KPA FTVEK+AARGLPSL A+ SFKIVA G KIKTDKP+G+NG MDLR+G+DASGRK KG GVY++VDKYGANVDGYSPIYNEN+WS SGDVY GG TGLAIWAVT VYNTSALAQ Sbjct: 13 KPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140
BLAST of FC925243 vs. ExPASy Swiss-Prot
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 1.892e-46 Identity = 91/128 (71.09%), Postives = 104/128 (81.25%), Query Frame = 2 Query: 80 KPAPFTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 454 KPAPF+VEK+A +GLPSLA++S F++ A G K+KTDKPYG+NG M LR+G+DASGRK KGKGVYQFVDKYGANVDGYSPIYN +DWSPSGDVY GG TGLAIWAVT V+NTSALAQ Sbjct: 9 KPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136
BLAST of FC925243 vs. ExPASy Swiss-Prot
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 2.092e-45 Identity = 93/129 (72.09%), Postives = 103/129 (79.84%), Query Frame = 2 Query: 80 KPAPFTVEKSAARGLPSLAK---TSFKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 454 KPA FTVEK +ARGLPSL + +SF+IVA G KIKTDKP+GVNG MDLR+G+DASGRK KG GVY+FVDKYGANVDGYSPIYNE++WS SGDVY GG TGLAIWAVT VYNTSALAQ Sbjct: 13 KPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141
BLAST of FC925243 vs. ExPASy Swiss-Prot
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 5.152e-44 Identity = 87/124 (70.16%), Postives = 101/124 (81.45%), Query Frame = 2 Query: 92 FTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 454 FT+EK++ +GLPSLA++S FK+VA G K+KTDKPYG+NG M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT VYNTSALAQ Sbjct: 15 FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138
BLAST of FC925243 vs. ExPASy Swiss-Prot
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 3.339e-43 Identity = 86/124 (69.35%), Postives = 99/124 (79.84%), Query Frame = 2 Query: 92 FTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 454 FT+EK + +GLPSL ++S FK+VA G K+KTDKPYG+NG M LR+G+DASGRK KGKGVYQ+VDKYGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT VYNTSALAQ Sbjct: 15 FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138
BLAST of FC925243 vs. ExPASy Swiss-Prot
Match: PSBR_SPIOL (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 1.715e-39 Identity = 83/129 (64.34%), Postives = 97/129 (75.19%), Query Frame = 2 Query: 80 KPAPFTVE-KSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALAQ 454 KP+ F V+ KSA +GLPSL+++S F + A G KIK DKP G+ GGM LR+G+D+SGRK GKGVYQFVDKYGANVDGYSPIYNE +W+P+GDVY GG TGL IWAVT VYNTSALAQ Sbjct: 12 KPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140
BLAST of FC925243 vs. ExPASy Swiss-Prot
Match: PSBR_HORVU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 4.524e-32 Identity = 69/119 (57.98%), Postives = 83/119 (69.75%), Query Frame = 2 Query: 98 VEKSAARGLPSLAKTSFKIVAKGGK-IKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXXVYNTSALA 451 +++S G+ A+ S IVAK K ++T +PYG GG+ +EG+DASGR AKGKGVYQF DKYGANVDGYSPIY +WSPSGDVY GG TGL +WAVT VY+TSALA Sbjct: 19 LQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137 The following BLAST results are available for this feature:
BLAST of FC925243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC925243 ID=FC925243; Name=FC925243; organism=Citrus clementina; type=EST; length=577bpback to top |