FC925370

Overview
NameFC925370
Unique NameFC925370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length794
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14629 contig Ccv1_Contig14629:1..794. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925370 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.384e-20
Identity = 63/168 (37.50%), Postives = 87/168 (51.79%), Query Frame = 2
Query:  311 SKDVTINKSNDLSVRIFLPRQALDSSSSTNKIK------LPVIVYFHGGGFILFSVGTSMTHDFCSNIASEFPAVVVSVDYRLAPEHRLPAAHDDAMEALHWIITTHDEWITNYAD-LTSCFLMGTSAGGNIVYYAGLRAAAEADNMLPLKIKGLILHSPFFGGLNRT 793
            S DV I++  +L  R++ P  A  S S T+         +PVIV+FHGG F   S  +++    C  +     AVVVSV+YR APE+R P A+DD    L W+      W+ +  D     FL G S+GGNIV+   +RA     ++L     G IL +P FGG  RT
Sbjct:   65 SFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWV--NSSSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRIDVL-----GNILLNPMFGGTERT 225          
BLAST of FC925370 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.566e-19
Identity = 59/167 (35.33%), Postives = 88/167 (52.69%), Query Frame = 2
Query:  326 INKSNDLSVRIFLPRQALDSSS----------STNKIKLPVIVYFHGGGFILFSVGTSMTHDFCSNIASEFPAVVVSVDYRLAPEHRLPAAHDDAMEALHWIITTHDEWITNYADL-TSCFLMGTSAGGNIVYYAGLRAAAEADNMLPLKIKGLILHSPFFGGLNRT 793
            ++ + +L  RI+ P   L  +           ST +I +PV+++FHGG F   S  +++   FC  + +    VVVSVDYR +PEHR P A+DD   AL+W+ +    W+ +  D     +L G S+GGNI +   +RA  E      +K+ G IL  P FGG  RT
Sbjct:   69 VDSTTNLLTRIYQPASLLHQTRHGTLELTKPLSTTEI-VPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSR--VWLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNEG-----VKVLGNILLHPMFGGQERT 227          
BLAST of FC925370 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.149e-18
Identity = 51/128 (39.84%), Postives = 73/128 (57.03%), Query Frame = 2
Query:  413 PVIVYFHGGGFILFSVGTSMTHDFCSNIASEFPAVVVSVDYRLAPEHRLPAAHDDAMEALHWIITTHDEWITNYADLTS-CFLMGTSAGGNIVYYAGLRAAAEADNMLPLKIKGLILHSPFFGGLNRT 793
            PVI++FHGG F+  S  +++    C         VVVSV+YR APEHR P A+DD   AL W+++    ++ +  D  +  FL G S+GGNI ++  +RAA E      +K+ G IL +  FGG  RT
Sbjct:  114 PVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS--QPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADEG-----VKVCGNILLNAMFGGTERT 234          
BLAST of FC925370 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.957e-17
Identity = 64/185 (34.59%), Postives = 90/185 (48.65%), Query Frame = 2
Query:  266 VAATLDPDDHQTIAVSKDVTINKSNDLSVRIFLPRQA--------LDSSSSTNKIKLPVIVYFHGGGFILFSVGTSMTHDFCSNIASEFPAVVVSVDYRLAPEHRLPAAHDDAMEALHWIITTHDEWITNYAD-LTSCFLMGTSAGGNIVYYAGLRAAAEADNMLPLKIKGLILHSPFFGGLNRT 793
            V A  +P D      S DV I++  +L  R++ P  A        LD     +   +PVI++FHGG F   S  +++    C  +      VVVSV+YR APE+  P A+DD   AL+W+      W+ +  D     FL G S+GGNI +   LRA     ++L     G IL +P FGG  RT
Sbjct:   53 VTANANPVDG---VFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWV--NSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGIDVL-----GNILLNPMFGGNERT 227          
BLAST of FC925370 vs. ExPASy Swiss-Prot
Match: ADCL2_HUMAN (Arylacetamide deacetylase-like 2 OS=Homo sapiens GN=AADACL2 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 47/145 (32.41%), Postives = 75/145 (51.72%), Query Frame = 2
Query:  341 DLSVRIFLPRQALDSSSSTNKIKLPVIVYFHGGGFILFSVGTSMTHDFCSN-IASEFPAVVVSVDYRLAPEHRLPAAHDDAMEALHWIITTHDEWITNY-ADLTSCFLMGTSAGGNIVYYAGLRAAAEADNMLPLKIKGLILHSP 769
            D+ VR++LP++  ++       +   ++YFHGGGF  F        DF +   A+   AVVV VDYRLAP+H  PA  +D + A+ + +   ++ +T Y  D T   + G S+GGN+     +    + D  +  KIK  +L  P
Sbjct:   88 DIPVRLYLPKRKSET-------RRRAVIYFHGGGFC-FGSSKQRAFDFLNRWTANTLDAVVVGVDYRLAPQHHFPAQFEDGLAAVKFFLL--EKILTKYGVDPTRICIAGDSSGGNLA--TAVTQQVQNDAEIKHKIKMQVLLYP 220          
BLAST of FC925370 vs. ExPASy Swiss-Prot
Match: YFZ3_SCHPO (AB hydrolase superfamily protein C1039.03 OS=Schizosaccharomyces pombe GN=SPAC1039.03 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.095e-11
Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 2
Query:  413 PVIVYFHGGGFILFSVGTSMTHDFCSNIASEFPAVVVSVDYRLAPEHRLPAAHDDAMEALHWIITTHDEWITNYADLTSCFLMGTSAGGNIVYYAGLRAAAEADNMLPLKIKGLIL 760
            P  ++FHGGG++L ++ T   + F +++  +   VVV+VDYRLAPE   PA  DD  EAL +     D    N   +    + G+SAGGNI      + AA   N  PL ++ L++
Sbjct:  101 PCFLWFHGGGWVLGNINTE--NSFATHMCEQAKCVVVNVDYRLAPEDPFPACIDDGWEALLYCYENADTLGINPNKIA---VGGSSAGGNIAAVLSHKVAASPANFPPLVLQLLVV 211          
The following BLAST results are available for this feature:
BLAST of FC925370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GI1L3_ARATH9.384e-2037.50Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L2_ARATH3.566e-1935.33Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ5.149e-1839.84Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L1_ARATH1.957e-1734.59Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
ADCL2_HUMAN1.604e-1132.41Arylacetamide deacetylase-like 2 OS=Homo sapiens G... [more]
YFZ3_SCHPO2.095e-1136.21AB hydrolase superfamily protein C1039.03 OS=Schiz... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YI08FM1 TF Citrus clementina cDNA clone KN0AAP8YI08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925370 ID=FC925370; Name=FC925370; organism=Citrus clementina; type=EST; length=794bp
CACACTAGTGCATTATGAATATATGAGTATTTTAAAGCCTACCAAGTATT
TACTTATGCTTGGCGTCAAGAAACGAAAAATAAGAGAGAATTGATCACCG
CCCATCAAGTTTCAGTTTCATTACATTCACAGAGCAAACCCTAATATGTC
AGATAAGTTTGCCCTCCCACATTCCATTGATCCCTATCTATACCTTCAGA
TCACCCCTAACGATGATGACACCCTCACTCGCAACTACAGCAATCTCCCA
AGTAGCCTACAAATGGTAGCCGCTACACTTGATCCTGATGATCACCAAAC
AATAGCTGTCTCCAAAGATGTTACCATCAATAAATCAAACGACCTTTCTG
TCCGCATATTCCTGCCCCGTCAAGCACTTGATTCTTCCTCTTCCACCAAT
AAAATTAAGCTACCTGTCATCGTTTACTTTCACGGTGGAGGGTTCATTCT
CTTCAGCGTTGGCACAAGCATGACTCACGATTTCTGCTCAAACATAGCAT
CCGAATTCCCTGCTGTAGTTGTATCAGTTGACTACAGGCTAGCCCCCGAG
CATCGTCTCCCGGCGGCTCATGATGATGCCATGGAAGCCTTGCACTGGAT
CATAACCACCCATGATGAGTGGATAACGAACTATGCTGACTTAACTTCAT
GTTTCTTAATGGGCACTAGTGCTGGCGGTAACATAGTTTATTATGCAGGG
CTACGTGCAGCTGCAGAAGCTGATAATATGTTACCATTGAAGATCAAAGG
GCTGATATTGCATTCACCTTTCTTTGGTGGGCTCAATAGGACTG
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