FC925387

Overview
NameFC925387
Unique NameFC925387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length753
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14632 contig Ccv1_Contig14632:1..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925387 vs. ExPASy Swiss-Prot
Match: ERG1_PANGI (Squalene monooxygenase OS=Panax ginseng PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.038e-41
Identity = 80/97 (82.47%), Postives = 90/97 (92.78%), Query Frame = 3
Query:  462 LAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRSFYNGRFHQRMRKK 752
            LA+TL  DGRRVHVIERD+TE DRIVGELLQPGGYLKL+ELGLEDCV EIDAQ+V GYAL+ DGK+TRLSYPLEKFH+DV+GRSF+NGRF QRMR+K
Sbjct:   89 LAYTLANDGRRVHVIERDLTEQDRIVGELLQPGGYLKLIELGLEDCVNEIDAQRVFGYALYMDGKNTRLSYPLEKFHSDVAGRSFHNGRFVQRMREK 185          
BLAST of FC925387 vs. ExPASy Swiss-Prot
Match: ERG11_ARATH (Squalene monooxygenase 1,1 OS=Arabidopsis thaliana GN=SQP1,1 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.239e-26
Identity = 59/99 (59.60%), Postives = 75/99 (75.76%), Query Frame = 3
Query:  462 LAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKSTRLSYPLE--KFHADVSGRSFYNGRFHQRMRKK 752
            LA+ L KDGRRVHVIERD+ EP+RI+GE +QPGG L L +LGLEDC+E IDAQ+  G  ++KDGK    S+P++   F  D S RSF+NGRF QR+R+K
Sbjct:   60 LAYALAKDGRRVHVIERDLREPERIMGEFMQPGGRLMLSKLGLEDCLEGIDAQKATGMTVYKDGKEAVASFPVDNNNFPFDPSARSFHNGRFVQRLRQK 158          
BLAST of FC925387 vs. ExPASy Swiss-Prot
Match: ERG12_BRANA (Squalene monooxygenase 1,2 OS=Brassica napus GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.606e-26
Identity = 59/98 (60.20%), Postives = 75/98 (76.53%), Query Frame = 3
Query:  462 LAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKSTRLSYPLE-KFHADVSGRSFYNGRFHQRMRKK 752
            LA+ L KDGRRVHVIERD+ EP R++GE +QPGG L L +LGL+DC+EEIDAQ+  G  LFKDGK T   +P++  F  + SGR F+NGRF QR+R+K
Sbjct:   63 LAYALAKDGRRVHVIERDMREPVRMMGEFMQPGGRLMLSKLGLQDCLEEIDAQKSTGIRLFKDGKETVACFPVDTNFPYEPSGRFFHNGRFVQRLRQK 160          
BLAST of FC925387 vs. ExPASy Swiss-Prot
Match: ERG12_ARATH (Squalene monooxygenase 1,2 OS=Arabidopsis thaliana GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.049e-25
Identity = 55/99 (55.56%), Postives = 76/99 (76.77%), Query Frame = 3
Query:  462 LAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKSTRLSYPLE--KFHADVSGRSFYNGRFHQRMRKK 752
            LA+ L KDGRRVHVIERD+ EP+R++GE +QPGG L L +LGL+DC+E+IDAQ+  G A++KDGK     +P++   F  + S RSF+NGRF Q++R+K
Sbjct:   60 LAYALAKDGRRVHVIERDMREPERMMGEFMQPGGRLMLSKLGLQDCLEDIDAQKATGLAVYKDGKEADAPFPVDNNNFSYEPSARSFHNGRFVQQLRRK 158          
BLAST of FC925387 vs. ExPASy Swiss-Prot
Match: ERG11_BRANA (Squalene monooxygenase 1,1 OS=Brassica napus GN=SQP1,1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.881e-25
Identity = 70/167 (41.92%), Postives = 92/167 (55.09%), Query Frame = 3
Query:  264 HYIAGTLIXXXXXXXXXXXXNDSKKPRKV---STTYKTQNDVFRSSVNAGKNGSPTDXXXXXXXXXXXXLAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKSTRLSYPLEK-FHADVSGRSFYNGRFHQRMRKK 752
            H    TL+            N  KK  K+   +T  +   D     V AG  GS               LA+ L KDGRRVHVIERD+ EP R++GE +QPGG L L +LGLEDC+E ID Q   G A++KDG+   +S+P +  F  + +GR+FYNGRF QR+R+K
Sbjct:    7 HVCLWTLLAFVLTWTVFYVNNRRKKVAKLPDAATEVRRDGDADVIIVGAGVGGSA--------------LAYALAKDGRRVHVIERDMREPVRMMGEFMQPGGRLLLSKLGLEDCLEGIDEQIATGLAVYKDGQKALVSFPEDNDFPYEPTGRAFYNGRFVQRLRQK 159          
BLAST of FC925387 vs. ExPASy Swiss-Prot
Match: ERG13_ARATH (Squalene monooxygenase 2 OS=Arabidopsis thaliana GN=SQP2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23
Identity = 54/98 (55.10%), Postives = 69/98 (70.41%), Query Frame = 3
Query:  462 LAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKSTRLSYPLEK-FHADVSGRSFYNGRFHQRMRKK 752
            LA+ L KDGRRVHVIERD+ EP R +GEL+Q GG   L +LGLEDC+E+IDAQ+    A++KDGK   L +P +K F  +  GR   NGR  QR+R+K
Sbjct:   58 LAYALAKDGRRVHVIERDLKEPQRFMGELMQAGGRFMLAQLGLEDCLEDIDAQEAKSLAIYKDGKHATLPFPDDKSFPHEPVGRLLRNGRLVQRLRQK 155          
BLAST of FC925387 vs. ExPASy Swiss-Prot
Match: ERG1_HUMAN (Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.269e-19
Identity = 61/134 (45.52%), Postives = 79/134 (58.96%), Query Frame = 3
Query:  354 TTYKTQNDVFRSSVNAGKNGSPTDXXXXXXXXXXXXLAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALF-KDGKS-TRLSYPLEKFHADVSGRSFYNGRFHQRMRK 749
            T+  +QND     V AG  GS               L   L +DGR+V VIERD+ EPDRIVGE LQPGGY  L +LGL D VE +DAQ V GY +  ++ KS  ++ YPL + +   SGR+F++GRF   +RK
Sbjct:  116 TSTSSQNDPEVIIVGAGVLGSA--------------LVAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGLGDTVEGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGRFIMSLRK 235          
BLAST of FC925387 vs. ExPASy Swiss-Prot
Match: ERG1_MOUSE (Squalene monooxygenase OS=Mus musculus GN=Sqle PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.622e-18
Identity = 49/98 (50.00%), Postives = 66/98 (67.35%), Query Frame = 3
Query:  462 LAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYAL--FKDGKSTRLSYPLEKFHADVSGRSFYNGRFHQRMRK 749
            LA  L +DGR+V VIERD+ EPDRIVGELLQPGGY  L ELGL D VE ++A  + GY +  ++     ++ YPL + +   SG +F++GRF   +RK
Sbjct:  136 LAAVLSRDGRKVTVIERDLKEPDRIVGELLQPGGYRVLQELGLGDTVEGLNAHHIHGYIVHDYESRSEVQIPYPLSETNQVQSGIAFHHGRFIMSLRK 233          
BLAST of FC925387 vs. ExPASy Swiss-Prot
Match: ERG1_SCHPO (Probable squalene monooxygenase OS=Schizosaccharomyces pombe GN=SPBC713.12 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.983e-16
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 3
Query:  462 LAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRSFYNGRFHQRMRK 749
            L   LG+ GR+V V+ERD++EPDRIVGELLQPGG   L ++G+ D VE ID Q   GY +F    +  + YP +       G  F+ GRF   +RK
Sbjct:   20 LGAALGRQGRKVLVLERDMSEPDRIVGELLQPGGIEALEKIGIADAVEGIDGQWTSGYQIFYGDSNVSVPYPSKPNGGAYQGIGFHYGRFVMNLRK 115          
BLAST of FC925387 vs. ExPASy Swiss-Prot
Match: ERG1_RAT (Squalene monooxygenase OS=Rattus norvegicus GN=Sqle PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.590e-16
Identity = 45/98 (45.92%), Postives = 63/98 (64.29%), Query Frame = 3
Query:  462 LAHTLGKDGRRVHVIERDVTEPDRIVGELLQPGGYLKLVELGLEDCVEEIDAQQVLGYALF--KDGKSTRLSYPLEKFHADVSGRSFYNGRFHQRMRK 749
            LA  L +DGR V VIERD+ EPDRI+GE LQPGGY  L ELGL D VE ++A  + GY +   +     ++ YP+ + +   SG +F++G+F   +RK
Sbjct:  137 LATVLSRDGRTVTVIERDLKEPDRILGECLQPGGYRVLRELGLGDTVESLNAHHIHGYVIHDCESRSEVQIPYPVSENNQVQSGVAFHHGKFIMSLRK 234          
The following BLAST results are available for this feature:
BLAST of FC925387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ERG1_PANGI3.038e-4182.47Squalene monooxygenase OS=Panax ginseng PE=2 SV=1[more]
ERG11_ARATH1.239e-2659.60Squalene monooxygenase 1,1 OS=Arabidopsis thaliana... [more]
ERG12_BRANA3.606e-2660.20Squalene monooxygenase 1,2 OS=Brassica napus GN=SQ... [more]
ERG12_ARATH1.049e-2555.56Squalene monooxygenase 1,2 OS=Arabidopsis thaliana... [more]
ERG11_BRANA8.881e-2541.92Squalene monooxygenase 1,1 OS=Brassica napus GN=SQ... [more]
ERG13_ARATH6.364e-2355.10Squalene monooxygenase 2 OS=Arabidopsis thaliana G... [more]
ERG1_HUMAN3.269e-1945.52Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=... [more]
ERG1_MOUSE1.622e-1850.00Squalene monooxygenase OS=Mus musculus GN=Sqle PE=... [more]
ERG1_SCHPO1.983e-1645.83Probable squalene monooxygenase OS=Schizosaccharom... [more]
ERG1_RAT2.590e-1645.92Squalene monooxygenase OS=Rattus norvegicus GN=Sql... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH05FM1 TF Citrus clementina cDNA clone KN0AAP3YH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925387 ID=FC925387; Name=FC925387; organism=Citrus clementina; type=EST; length=753bp
TCTAACTGTAACTTTTGTTTATAATAAGAAGCGGCCTCTCCCTCCGAGTT
TCTCTCTCCTCACCGATCTGTCTTCACCACCACAAAACCCCACGAAAAAA
CAAACAAAAACAGAAGGAGCCAGCTGGCAGCTGCTGCTACTGCTGTTCCC
AAAACAGAAACGAAATCTTGATCAAACAACGACCATCCATCTTTCTTGCA
TCATCAACCTCGGGTTCTCACCGTTTCTTCAATCTTTCTACCGAGAACAA
GGCTTCGATGGATCACTACATTGCGGGCACTCTCATTGCCGCTGTGTTTC
TCCTTCTCTTCGTTGTCCGCCGCAACGACAGTAAGAAGCCAAGGAAGGTT
TCCACGACGTACAAGACGCAGAACGACGTTTTTCGGAGCTCTGTTAACGC
CGGAAAGAATGGCTCCCCTACCGACGTCATCATTGTTGGTGCCGGTGTTG
CCGGTGCTGCCTTGGCTCATACTCTTGGCAAGGATGGAAGACGAGTTCAT
GTGATAGAAAGAGACGTGACTGAGCCTGACAGAATTGTTGGTGAACTGCT
TCAGCCTGGAGGATACCTGAAATTAGTTGAATTAGGTCTTGAGGATTGTG
TGGAAGAAATCGATGCCCAGCAAGTACTTGGTTATGCTCTTTTCAAGGAT
GGAAAAAGTACAAGACTGTCATATCCATTGGAGAAATTTCATGCAGATGT
TTCTGGAAGGAGCTTCTACAATGGGCGTTTCCATCAACGGATGAGAAAAA
AAA
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