FC930003
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930003 vs. ExPASy Swiss-Prot
Match: HDT1_SOLCH (Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.964e-21 Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 2 Query: 53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVLRKSLSFLTTGRTG 310 MEFWG EVK+G+PL V+P ++HLSQASLGE KK+K +SV L V KKLVLGTL E +PQ FDLV + ++G Sbjct: 1 MEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDKS-ESVCLSVNIDGKKLVLGTLNSEKVPQQQFDLVFDRDFELSHNLKSG 85 HSP 2 Score: 38.5058 bits (88), Expect = 2.964e-21 Identity = 18/37 (48.65%), Postives = 24/37 (64.86%), Query Frame = 1 Query: 286 LSHNWKNGSIYFCGYQ--TPLPMDSSDEFDMGDSDEE 390 LSHN K+GS+YF GY+ P + DE D +SDE+ Sbjct: 78 LSHNLKSGSVYFFGYKATNPFEEEEDDEDDYDESDED 114
BLAST of FC930003 vs. ExPASy Swiss-Prot
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.864e-20 Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 2 Query: 53 MEFWGVEVKAGQPLKVKPN--FDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVL 271 MEFWGVEVK GQ + V P D+ IH+SQ +LGE+KK+K ++ V L++K G++K+VLGTL + IP LS DLVL Sbjct: 1 MEFWGVEVKVGQTVTVDPMDPVDSYIHISQVALGEAKKDKPNEPVVLYLKVGEQKIVLGTLSRDGIPHLSLDLVL 75 HSP 2 Score: 36.1946 bits (82), Expect = 1.864e-20 Identity = 16/38 (42.11%), Postives = 25/38 (65.79%), Query Frame = 1 Query: 286 LSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQE 399 LSH K+ S++FCGY+ D++ +F DS EE++E Sbjct: 81 LSHTSKSASVFFCGYKVLTGNDNASDF--SDSSEEDEE 116
BLAST of FC930003 vs. ExPASy Swiss-Prot
Match: HDT3_MAIZE (Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.526e-19 Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 2 Query: 53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVLRKSLSFLTTGRT 307 MEFWG+EVK G +K +P + ++HLSQA+LGESKK D+ ++VK D+KL +GTL + P + FDL+ K T +T Sbjct: 1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKKS---DNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKT 82 HSP 2 Score: 37.7354 bits (86), Expect = 1.526e-19 Identity = 16/43 (37.21%), Postives = 26/43 (60.47%), Query Frame = 1 Query: 286 LSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSI 414 LSH K S++F GY+ P + DE D+ DE+E+ +P++ Sbjct: 76 LSHTSKTTSVFFTGYKVEQPFE-EDEMDLDSEDEDEELNVPAV 117
BLAST of FC930003 vs. ExPASy Swiss-Prot
Match: HDT1_MAIZE (Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.354e-19 Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 2 Query: 53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVLRKSLSFLTTGRT 307 MEFWG+EVK G +K +P + ++HLSQA+LGESKK D+ ++VK D+KL +GTL + P + FDL+ K T +T Sbjct: 1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKKS---DNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKT 82 HSP 2 Score: 36.5798 bits (83), Expect = 3.354e-19 Identity = 16/43 (37.21%), Postives = 25/43 (58.14%), Query Frame = 1 Query: 286 LSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSI 414 LSH K S++F GY+ P + DE D+ DE+E+ +P + Sbjct: 76 LSHTSKTTSVFFTGYKVEQPFE-EDEMDLDSEDEDEELNVPVV 117
BLAST of FC930003 vs. ExPASy Swiss-Prot
Match: HDT1_ARATH (Histone deacetylase HDT1 OS=Arabidopsis thaliana GN=HDT1 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 7.719e-18 Identity = 50/91 (54.95%), Postives = 60/91 (65.93%), Query Frame = 2 Query: 53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVLRKSLSFLTTGRTGVSTFV 325 MEFWG+EVK+G+P+ V P +IH+SQASLGE K +KG + VPL VK G++ LVLGTL ENIPQL DLV K T G FV Sbjct: 1 MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKG-EFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFV 90
BLAST of FC930003 vs. ExPASy Swiss-Prot
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.609e-15 Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 2 Query: 53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVLRKSLSFLTTGRT 307 MEFWG+EVK G +K +P I+H+SQA+LGESKK DS ++VK DKKL +GTL + PQ+ FDLV K T +T Sbjct: 1 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKS---DSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKT 82
BLAST of FC930003 vs. ExPASy Swiss-Prot
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15 Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 2 Query: 53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVLRKSLSFLTTGRTG 310 MEFWGVEVK G+PL + P D ++H+SQ +LGESK + + L+V G KL++GTL E PQLS ++VL ++ + T + G Sbjct: 1 MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNNV-TEPIQLYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNG 85
BLAST of FC930003 vs. ExPASy Swiss-Prot
Match: HDT2_ARATH (Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=1 SV=2) HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11 Identity = 38/83 (45.78%), Postives = 48/83 (57.83%), Query Frame = 2 Query: 53 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPENIPQLSFDLVLRKSLSFLTTG 301 MEFWGV V KV P D+++H+SQASL + K +SV L V G KLV+GTL + PQ+SFDLV K +G Sbjct: 1 MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSG--ESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSG 81 The following BLAST results are available for this feature:
BLAST of FC930003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930003 ID=FC930003; Name=FC930003; organism=Citrus clementina; type=EST; length=634bpback to top |