FC930004
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PPR86_ARATH (Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1) HSP 1 Score: 314.309 bits (804), Expect = 4.543e-85 Identity = 161/227 (70.93%), Postives = 182/227 (80.18%), Query Frame = 3 Query: 78 MAMPQRFGRTKNIAKRS-KKHLEEALYDRLFKKGGSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVA 755 MAM + R++++ KRS KK++EE LY+RLFK GG++V VRQQLNQFLK K VFKWEVGDT+KKLR+R LYYPALKLSE ME+RGMNKTVSDQAIHLDLVAK + I A ENYFVDLPETSK LTYGSLLNCYCKEL+T SSM +NSLMTLY KTG EK+PA+IQE+KA ++MPDSYTYNVWMRALAA NDISG ERVIEEM RDGRVA Sbjct: 1 MAM-RHLSRSRDVTKRSTKKYIEEPLYNRLFKDGGTEVKVRQQLNQFLKGTKHVFKWEVGDTIKKLRNRGLYYPALKLSEVMEERGMNKTVSDQAIHLDLVAKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVA 226
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PPR4_ARATH (Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.366e-33 Identity = 77/216 (35.65%), Postives = 123/216 (56.94%), Query Frame = 3 Query: 99 GRTKNIAKRSKKHLEEALYDRLFKKGGSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHL-TYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD 743 G ++A + + LY +L + +V + LNQF+ V K ++ K LR + A ++ + MEKR M +VSD AI LDL+ K +G++AAENYF +L ++KNH TYG+L+NCYC EL +S+PFN++M++Y + PEK+P ++ MK I P TY++WM++ ++ND+ G E++I+EM +D Sbjct: 56 GVRTSVAAPTVASRQRELYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWMEKRKMTFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLDGLEKIIDEMGKD 271
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PP300_ARATH (Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 2.003e-32 Identity = 79/215 (36.74%), Postives = 124/215 (57.67%), Query Frame = 3 Query: 111 NIAKRSKKHLEEALYDRLFK---KGGSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG 746 ++ ++KKH ++Y +L +GG + + LNQF+ V K ++ K LR + AL++ E ME++ + T SD AI L+L+AK +G++AAE YF L ++ KN TYGSLLNCYC E +S+PFN+LM +Y G PEK+PA++ MK SI P TY++W+++ ++ D+ G E+V++EMK +G Sbjct: 30 SVPTKAKKH--RSIYKKLSSLGTRGGG--KMEETLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWMERKEIAFTGSDHAIRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVLDEMKAEG 240
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PPR3_ARATH (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 2.801e-26 Identity = 66/201 (32.84%), Postives = 104/201 (51.74%), Query Frame = 3 Query: 147 ALYDRLFKKGGSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRG--MNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD 743 A+Y ++ ++ LNQ+ K+ +++ KWE+ +K+LR K AL++ + M RG + SD AI LDL+ KV+GI AE +F+ LPE K+ YGSLLN Y + +PFN +MTLY +K+ A++ EMK I D Y+YN+W+ + ++ + E V ++MK D Sbjct: 68 AIYKKISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNRGERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVYQQMKSD 268
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PP334_ARATH (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 6.900e-25 Identity = 63/198 (31.82%), Postives = 107/198 (54.04%), Query Frame = 3 Query: 150 LYDRLFKKGGSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNK-TVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKR 740 LY ++ G SV +L +++ K+V E+ + LR RK + AL++S+ M + G+ + ++ A+HLDL+ +V G AE YF +L E KN TYG+LLNCY ++ SS+ +N++M LY G EK+P +++EMK ++ PD+Y+Y + + A A+ D+ + +M+R Sbjct: 27 LYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNETGVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERIGGTLRDMER 224
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PP302_ARATH (Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.205e-22 Identity = 55/171 (32.16%), Postives = 98/171 (57.31%), Query Frame = 3 Query: 234 VFKWEVGDTLKKLRDRKLYYPALKLSENME-KRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD 743 V K+E+ +++LR K Y AL++ E M + + D A+HLDL++K++G+++AE +F D+P+ + H SLL+ Y + ++ S +P+N ++++Y G EK+P +I+E+K + PD TYN+W+ A A+ ND+ GAE+V + K + Sbjct: 91 VRKYELNRIVRELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIRT-SPDIVTYNLWLTAFASGNDVEGAEKVYLKAKEE 260
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PP372_ARATH (Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.218e-21 Identity = 64/203 (31.53%), Postives = 106/203 (52.22%), Query Frame = 3 Query: 141 EEALYDRLFKKGGSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNK-TVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXX-GFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD 743 ++ L R+F+ S L +++ ++ E+ + K+LR + Y AL+++E M + +K + +D A +DL++KV GIDAAE YF L SK TY SLL+ Y T F ++ +N +MTLY G EK+P +I+ +K + PD +TYN+W+ + AA +I +++EEM+ D Sbjct: 54 KDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWMVQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDELRKILEEMRHD 256
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.489e-19 Identity = 55/201 (27.36%), Postives = 102/201 (50.75%), Query Frame = 3 Query: 144 EALYDRLFKKGGSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNK-TVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD 743 + L R+ + G S+ + L+ +L V E+ +K LR + AL++S+ M + +++ + D AI LDL+AKV G+ AE +F +P +N+ YG+LLNCY + + +P+N ++ LY +TG + +++EM+ ++ PD +T N + A + V+D+ G E+ + + D Sbjct: 38 DTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMSEHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEGMEKFLMRCEAD 238
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PP400_ARATH (Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.196e-14 Identity = 65/221 (29.41%), Postives = 99/221 (44.80%), Query Frame = 3 Query: 105 TKNIAKRSKKHLEEALYDRLFKKGGSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENME-KRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKN----HLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRV 752 T ++A R+ L+E L +K G SV L + + S V E+ K+L Y AL++ E ME ++ + +V D A+ LDL+ K G+ E YF L +S + Y LL Y K M + PFN +M LY +G EK+ ++ MK + I + +YN+WM A V+ ++ E V +EM D V Sbjct: 32 TSSVANRNS--LKEIL-----RKNGPRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWMENQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCEVSGVAAVETVYKEMVGDKSV 245
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PPR61_ARATH (Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 2.720e-13 Identity = 54/181 (29.83%), Postives = 88/181 (48.62%), Query Frame = 3 Query: 195 RQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGM-NKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGF-SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 731 RQQ NQ S RV +KKLRD AL++SE M K + N D A L L+ V G++ AE +F +P+ ++ Y SLLN Y + T +P+N++M+LY+ + EK+ ++ EMK + + D+ T N ++ +AV D++ E+ + + Sbjct: 60 RQQGNQVNPSHVRVI-------IKKLRDSDQSLQALQVSEWMSKEKICNLIPEDFAARLHLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEKFLNK 233 The following BLAST results are available for this feature:
BLAST of FC930004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930004 ID=FC930004; Name=FC930004; organism=Citrus clementina; type=EST; length=760bpback to top |