FC930086

Overview
NameFC930086
Unique NameFC930086
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15147 contig Ccv1_Contig15147:346..995. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 386.726 bits (992), Expect = 5.474e-107
Identity = 174/215 (80.93%), Postives = 191/215 (88.84%), Query Frame = 1
Query:    4 HQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDW 648
            H LP PLS+    +YWA+QGCILTGVWV+AHECGHHAFSDYQ LDD VGLILHS LLVPYFSWKYSH RHHSNTGSL+RDEVFVPKQK+ I WY+KYLNNP GRV+TL VTLTLGWPLYLA NVSGRPYDRFACH+DPYGPIYSDRERLQI+ISDAG+LA++Y L+ L  AKGL +V C+YG PLLVVNGFLVLIT LQHTHP+LPHY SSEWDW
Sbjct:   75 HLLPGPLSFRGMAIYWAVQGCILTGVWVIAHECGHHAFSDYQLLDDIVGLILHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSCIKWYSKYLNNPPGRVLTLAVTLTLGWPLYLALNVSGRPYDRFACHYDPYGPIYSDRERLQIYISDAGVLAVVYGLFRLAMAKGLAWVVCVYGVPLLVVNGFLVLITFLQHTHPALPHYTSSEWDW 289          
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 6.691e-105
Identity = 168/213 (78.87%), Postives = 186/213 (87.32%), Query Frame = 1
Query:   10 LPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDW 648
            LP PLSYLAWP+YWA QGC+LTG+WV+AHECGHHAFSDYQWLDDTVGLI HS LLVPYFSWKYSH RHHSNTGSL+RDEVFVPKQK+AI WY KYLNNPLGR++ LTV   LGWPLYLAFNVSGRPYD FACHF P  PIY+DRERLQI++SDAGILA+ + LY   AA+G+  + C+YG PLL+VN FLVLIT LQHTHPSLPHY SSEWDW
Sbjct:   77 LPQPLSYLAWPLYWACQGCVLTGIWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSAIKWYGKYLNNPLGRIMMLTVQFVLGWPLYLAFNVSGRPYDGFACHFFPNAPIYNDRERLQIYLSDAGILAVCFGLYRYAAAQGMASMICLYGVPLLIVNAFLVLITYLQHTHPSLPHYDSSEWDW 289          
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 369.392 bits (947), Expect = 9.044e-102
Identity = 166/214 (77.57%), Postives = 184/214 (85.98%), Query Frame = 1
Query:   10 LPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPY-DRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDW 648
            LPHPLSY+AWP+YWA QG +LTGVWV+AHECGHHAFSDYQWLDDTVGLI HS LLVPYFSWKYSH RHHSNTGSL+RDEVFVPK+K+ I WY KYLNNPLGR + LTV  TLGWPLY AFNVSGRPY + FACHF P  PIY+DRERLQI++SDAGILA+ Y LY   AA+G+  + C+YG PLL+VN FLVLIT LQHTHPSLPHY SSEWDW
Sbjct:   77 LPHPLSYVAWPLYWACQGVVLTGVWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKKKSDIKWYGKYLNNPLGRTVMLTVQFTLGWPLYWAFNVSGRPYPEGFACHFHPNAPIYNDRERLQIYVSDAGILAVCYGLYRYAAAQGVASMVCLYGVPLLIVNAFLVLITYLQHTHPSLPHYDSSEWDW 290          
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 2.085e-98
Identity = 154/215 (71.63%), Postives = 180/215 (83.72%), Query Frame = 1
Query:    4 HQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDW 648
            H LP P S +AWP+YW LQGC+LTGVWV+AHECGHHAFS YQW+DD VGL LHS LLVPYFSWK SH RHHSNTGSLDRDEVFVPK K+ + W++KYLNNPLGR ++L VTLT+GWP+YLAFNVSGRPYD FA H+ PY PIYS+RERL I++SD  + ++ YSLY +   KGLV++ C+YG PLL+VNGFLV IT LQHTH +LPHY SSEWDW
Sbjct:   79 HLLPQPFSLIAWPIYWVLQGCLLTGVWVIAHECGHHAFSKYQWVDDVVGLTLHSTLLVPYFSWKISHRRHHSNTGSLDRDEVFVPKPKSKVAWFSKYLNNPLGRAVSLLVTLTIGWPMYLAFNVSGRPYDSFASHYHPYAPIYSNRERLLIYVSDVALFSVTYSLYRVATLKGLVWLLCVYGVPLLIVNGFLVTITYLQHTHFALPHYDSSEWDW 293          
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 1.960e-80
Identity = 131/213 (61.50%), Postives = 162/213 (76.06%), Query Frame = 1
Query:   10 LPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDW 648
            LP PL+YLAWP+YW  Q  ILTG+WV+ HECGHHAFSDYQW+DDTVG ILHS L+ PYFSWKYSH  HH+NT SLD DEV++PK K  +  Y K LN+P GR++ + +T TLG+PLYL  N+SG+ Y+RFA HFDP  PI+ +RER Q+ +SD G+LA++Y +   VAAKG  +V CIYG P+L V  F  +IT L HTH SLPHY SSEW+W
Sbjct:   70 LPAPLAYLAWPLYWFCQASILTGLWVIGHECGHHAFSDYQWVDDTVGFILHSFLMTPYFSWKYSHRNHHANTNSLDNDEVYIPKSKAKVALYYKVLNHPPGRLLIMFITFTLGFPLYLFTNISGKKYERFANHFDPMSPIFKERERFQVLLSDLGLLAVLYGVKLAVAAKGAAWVTCIYGIPVLGVFIFFDIITYLHHTHLSLPHYDSSEWNW 282          
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 9.490e-51
Identity = 101/233 (43.35%), Postives = 135/233 (57.94%), Query Frame = 1
Query:    1 IHQLPHPL-SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAK--------------YLNN--PLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDW 648
            I +  +PL  YLAWP YW +QG + TG+WV+AHECGH +FS  + L++TVG ILHS LLVPY SW+ SH +HH  TG + +D+VFVPK ++ +G   K              +L+   P+  +  + +    GWP YL  N SG+ Y R+  HF  Y PI+  R    I ISD G+LA + +L        L+ V   Y  P L VN +LVLIT LQHT P LPHY    W++
Sbjct:   80 IDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVPKTRSQVGLPPKENAAAAVQEEDMSVHLDEEAPIVTLFWMVIQFLFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLGVLAALGALIYASMQLSLLTVTKYYIVPYLFVNFWLVLITFLQHTDPKLPHYREGAWNF 312          
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.239e-50
Identity = 101/233 (43.35%), Postives = 135/233 (57.94%), Query Frame = 1
Query:    1 IHQLPHPL-SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAK--------------YLNN--PLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDW 648
            I +  +PL  YLAWP YW +QG + TG+WV+AHECGH +FS  + L++TVG ILHS LLVPY SW+ SH +HH  TG + +D+VFVPK ++ +G   K              +L+   P+  +  + +    GWP YL  N SG+ Y R+  HF  Y PI+  R    I ISD G+LA + +L        L+ V   Y  P L VN +LVLIT LQHT P LPHY    W++
Sbjct:   80 IDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVPKTRSQVGLPPKESAAAAVQEEDMSVHLDEEAPIVTLFWMVIQFLFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLGVLAALGALIYASMQLSLLTVTKYYIIPYLFVNFWLVLITFLQHTDPKLPHYREGAWNF 312          
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.683e-31
Identity = 76/216 (35.19%), Postives = 112/216 (51.85%), Query Frame = 1
Query:   16 HPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVP---KQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH--THPSLPHYHSSEWDW 648
            H  S+L +P+YWA+QG +   ++V+ H+CGH +FSD Q L++ VG ILHS +LVPY  W+ SH  HH N G+++ DE +VP   K    +G+  K+L   +   +       L +P+YL     G+       HF+PY  ++   ER  +  S      M   L  L  A G + +F IYG P L+   +L  +T L H      LP Y   EW +
Sbjct:   71 HLDSWLFYPLYWAIQGTMFWAIFVLGHDCGHGSFSDSQLLNNVVGHILHSAILVPYHGWRISHKTHHQNHGNVETDESWVPMPEKLYNKVGYSTKFLRYKIPFPL-------LAYPMYLMKRSPGKS----GSHFNPYSDLFQPHERKYVVTSTLCWTVMAALLLYLCTAFGSLQMFKIYGAPYLIFVMWLDFVTYLHHHGYEKKLPWYRGKEWSY 275          
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.425e-30
Identity = 76/211 (36.02%), Postives = 109/211 (51.66%), Query Frame = 1
Query:   25 SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTL-TLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH--THPSLPHYHSSEWDW 648
            S+  WP+YWA QG +   ++V+ H+CGH +FSD   L+  VG ILHS +LVPY  W+ SH  HH N G ++ DE +VP  +     Y K  ++   R++  TV L  L +PLYL +   G+       HF+PY  +++  ER  I  S      M  SL  L    G + V  +YG P ++   +L  +T L H      LP Y   EW +
Sbjct:   78 SWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPERV---YKKLPHST--RMLRYTVPLPMLAYPLYLCYRSPGKE----GSHFNPYSSLFAPSERKLIATSTTCWSIMFVSLIALSFVFGPLAVLKVYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSY 279          
BLAST of FC930086 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.021e-28
Identity = 74/212 (34.91%), Postives = 107/212 (50.47%), Query Frame = 1
Query:   25 SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHHRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLG-RVITLTVTL-TLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIFISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH--THPSLPHYHSSEWDW 648
            S+  WP+YW  QG +   ++V+ H+CGH +FSD   L+  VG ILHS +LVPY  W+ SH  HH N G ++ DE +VP  +        Y N P   R++  TV L  L +P+YL +   G+       HF+PY  +++  ER  I  S      M+ +L  L      V V  +YG P ++   +L  +T L H      LP Y   EW +
Sbjct:   75 SWFLWPLYWVAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPEKL------YKNLPHSTRMLRYTVPLPMLAYPIYLWYRSPGKE----GSHFNPYSSLFAPSERKLIATSTTCWSIMLATLVYLSFLVDPVTVLKVYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSY 276          
The following BLAST results are available for this feature:
BLAST of FC930086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
FD6E2_SOYBN5.474e-10780.93Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_ARATH6.691e-10578.87Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU9.044e-10277.57Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN2.085e-9871.63Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL1.960e-8061.50Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FAD12_MORAP9.490e-5143.35Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD12_MORIS1.239e-5043.35Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD3E_TOBAC1.683e-3135.19Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_ARATH1.425e-3036.02Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_BRANA1.021e-2834.91Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionC34003F06EF PostHarvC1 Citrus clementina cDNA clone C34003F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930086 ID=FC930086; Name=FC930086; organism=Citrus clementina; type=EST; length=650bp
ATTCACCAACTTCCTCACCCTCTCTCTTATCTGGCCTGGCCAGTTTACTG
GGCTCTTCAAGGCTGCATTTTAACTGGAGTTTGGGTTGTAGCTCATGAAT
GTGGCCACCATGCCTTCAGTGACTATCAATGGCTTGACGACACTGTTGGC
CTTATCCTCCACTCTTGCCTCCTTGTCCCCTACTTCTCTTGGAAGTATAG
CCATCACCGCCATCACTCCAATACAGGATCCCTTGATCGTGATGAAGTAT
TTGTCCCCAAGCAAAAAACCGCCATTGGTTGGTATGCCAAGTACCTTAAC
AACCCACTTGGCCGAGTCATAACACTTACTGTCACCCTCACCCTTGGCTG
GCCTTTGTACCTGGCATTCAATGTATCCGGTAGGCCTTATGATAGATTTG
CTTGCCACTTTGATCCTTATGGCCCCATCTACTCAGACCGCGAGAGGCTC
CAAATTTTCATTTCTGATGCTGGAATTTTAGCTATGATTTACAGTCTCTA
CTGTCTTGTAGCAGCAAAAGGACTTGTGTACGTGTTCTGCATCTATGGAG
GACCTTTGCTGGTAGTGAACGGATTTCTCGTTTTGATCACATTGTTGCAG
CACACTCACCCTTCACTGCCACATTACCATTCTTCAGAATGGGACTGGTT
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