FC930130

Overview
NameFC930130
Unique NameFC930130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSB4_ARATH (Proteasome subunit beta type-4 OS=Arabidopsis thaliana GN=PBG1 PE=1 SV=2)

HSP 1 Score: 295.049 bits (754), Expect = 2.553e-79
Identity = 146/209 (69.86%), Postives = 165/209 (78.95%), Query Frame = 1
Query:  154 QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELM----------------------------RNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGLGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKAADSKITEEGTNISQPYALKNVW 696
            QRT  PYVTGTS+VA+KYKDG+LMA+DMGGSYGST+RYK++ER+K IGKHSLLGASGEISDFQE+LR LDEL                             RNKF+PLWN+LVLGGVKNG+ YLGMVSMIGV+FED HVATG GNHLARPILRDEWH +LS+EDGVKLLEKCMRVLLYRDRSA+NK   +KITEEG  +SQPY+LK  W
Sbjct:   22 QRTLYPYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEISDFQEILRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKNGKSYLGMVSMIGVSFEDDHVATGFGNHLARPILRDEWHADLSFEDGVKLLEKCMRVLLYRDRSAINKLQIAKITEEGVTVSQPYSLKTYW 230          
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSB4_BOVIN (Proteasome subunit beta type-4 OS=Bos taurus GN=PSMB4 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.085e-37
Identity = 84/215 (39.07%), Postives = 129/215 (60.00%), Query Frame = 1
Query:  148 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELM----------------------------RNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGLGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKAADSKITEEGTNISQPYALKNVWGI 702
            PI RTQ P VTGTSV+ LK++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L +++                            R+K +PLWN++V+GG  +G+ +LG V M+GV +E   +ATG G +LA+P+LR+  E    LS  +  +L+E+CMRVL YRD  + N+   + +TE+G  I  P + +  W I
Sbjct:   42 PITRTQNPMVTGTSVLGLKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRDARSYNRFQIATVTEKGVEIEGPLSAETNWDI 256          
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSB4_HUMAN (Proteasome subunit beta type-4 OS=Homo sapiens GN=PSMB4 PE=1 SV=4)

HSP 1 Score: 154.836 bits (390), Expect = 4.123e-37
Identity = 83/215 (38.60%), Postives = 128/215 (59.53%), Query Frame = 1
Query:  148 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELM----------------------------RNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGLGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKAADSKITEEGTNISQPYALKNVWGI 702
            PI RTQ P VTGTSV+ +K++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L +++                            R+K +PLWN++V+GG  +G+ +LG V M+GV +E   +ATG G +LA+P+LR+  E    LS  +   L+E+CMRVL YRD  + N+   + +TE+G  I  P + +  W I
Sbjct:   42 PITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQIATVTEKGVEIEGPLSTETNWDI 256          
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSB4_MOUSE (Proteasome subunit beta type-4 OS=Mus musculus GN=Psmb4 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.385e-37
Identity = 83/215 (38.60%), Postives = 128/215 (59.53%), Query Frame = 1
Query:  148 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELM----------------------------RNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGLGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKAADSKITEEGTNISQPYALKNVWGI 702
            PI RTQ P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L +++                            R+K +PLWN++V+GG  +G+ +LG V M+GV +E   +ATG G +LA+P+LR+  E    LS  +  +L+E+CMRVL YRD  + N+   + +TE+G  I  P + +  W I
Sbjct:   42 PITRTQNPMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRDARSYNRFQIATVTEKGVEIEGPLSAQTNWDI 256          
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSB4_RAT (Proteasome subunit beta type-4 OS=Rattus norvegicus GN=Psmb4 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.567e-36
Identity = 84/218 (38.53%), Postives = 127/218 (58.26%), Query Frame = 1
Query:  139 PNDPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELM----------------------------RNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGLGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKAADSKITEEGTNISQPYALKNVWGI 702
            P  PI RTQ P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L +++                            R+K +PLWN+ V+GG   G+ +LG V M+GV +E   +ATG G +LA+P+LR+  E    LS  +  +L+E+CMRVL YRD  + N+   + +TE+G  I  P + +  W I
Sbjct:   38 PARPITRTQNPMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQVLGQMVIDEELFGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTKVIGGYAGGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRDARSYNRFQVATVTEKGVEIEGPLSAQTNWDI 255          
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSB4_XENLA (Proteasome subunit beta type-4 (Fragment) OS=Xenopus laevis GN=psmb4 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.559e-36
Identity = 77/215 (35.81%), Postives = 129/215 (60.00%), Query Frame = 1
Query:  148 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELM----------------------------RNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGLGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKAADSKITEEGTNISQPYALKNVWGI 702
            P++ T  P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  + ++++LGASG+ +D+Q L + +D+++                            R+K +PLWN++V+GG  NG+ +LG V  +GV +E   +ATG G +LA+P+LR+  E    LS E+  +L+++CM+VL YRD  + N+   + +TE G  +  P + +  W I
Sbjct:   20 PVRHTLNPMVTGTSVLGVKFDGGVIIAADMLGSYGSLARFRNISRIMKVNENTILGASGDYADYQYLKQVIDQMVIDEELVGDGHNYSPKAIHSWLTRVMYNRRSKMNPLWNTVVIGGFYNGESFLGYVDKLGVAYEAPTIATGFGAYLAQPLLREVTENKATLSKEEARQLVDRCMKVLYYRDARSYNRFEITTVTESGVEVEGPLSSETNWEI 234          
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSB4_DICDI (Proteasome subunit beta type-4 OS=Dictyostelium discoideum GN=psmB4-1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.502e-34
Identity = 80/207 (38.65%), Postives = 118/207 (57.00%), Query Frame = 1
Query:  154 QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELM----------------------------RNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGLGNHLARPILRDEWHE--NLSYEDGVKLLEKCMRVLLYRDRSAVNKAADSKITEEGTNISQPYAL 684
            Q+T  P VTGTSV+A+KY  G++M +DM  SYGS  R+ S ER+K  G ++++GASGE SDFQ +   L++L+                            RN+ +PLWN+LV+ G + G+ +LG V ++G  ++D  + TG G+H+A P+LR    E  N++ E   +L++ C+RVL YRD  +  K   S   EEG  IS P  L
Sbjct:   35 QKTLDPIVTGTSVIAIKYDKGVVMGSDMLLSYGSLARFNSTERMKKFGGYTIVGASGEYSDFQSITNTLNDLVTDDHCMDDGSKLSSEEIWNYLARVLYNQRNRGNPLWNTLVVMGYQGGKSFLGKVDLVGTCYKDDIITTGYGSHIALPLLRKARDENPNMNLEQAKQLIQDCLRVLFYRDARSSKKIQISVAGEEGIEISGPIEL 241          
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSB4_SCHPO (Probable proteasome subunit beta type-4 OS=Schizosaccharomyces pombe GN=SPBC577.10 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.718e-33
Identity = 80/218 (36.70%), Postives = 119/218 (54.59%), Query Frame = 1
Query:  148 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDEL----------------------------MRNKFDPLWNSLVLGGV--KNGQKYLGMVSMIGVNFEDSHVATGLGNHLARPILR-----DEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKAADSKITEEGTNISQPYALKNVW 696
            PIQRT  P VTG+SV+ALK+ DG+++AAD   SYGS  R+  VER+  +G ++++GA G+ISD+Q++ R L++L                             RNK DP WN L++ GV  +N + Y+    + G  +    +ATG   HLA P+LR     D W + LS E     +++CMRVL YRD  ++NK + + IT EG       ++ + W
Sbjct:   32 PIQRTVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQIQRLLEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAFADLRGTTYSAPAIATGFAMHLALPMLRKATDDDRW-KTLSKESARATIDECMRVLFYRDARSLNKFSVATITPEGIEFQTDQSVSSKW 248          
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSB4_YEAST (Proteasome component PRE4 OS=Saccharomyces cerevisiae GN=PRE4 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27
Identity = 70/198 (35.35%), Postives = 112/198 (56.57%), Query Frame = 1
Query:  148 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELM--------------------------------RNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGLGNHLARPIL-----RDEWHENLSYEDGVKLLEKCMRVLLYRD-RSAVN 624
            P+  TQ P VTGTSV+++KY +G+++AAD  GSYGS +R+  VER+ P+G ++++G SG+ISD Q + R L +L+                                R+K +PLWN++++ GV+ NG ++L  V+++GV +    +ATG G H+A P+L     R+      + +   + +   MRVL YRD RS+ N
Sbjct:   30 PMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRN 227          
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSB4_ENCCU (Probable proteasome subunit beta type-4 OS=Encephalitozoon cuniculi GN=PRE4 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.125e-26
Identity = 73/213 (34.27%), Postives = 111/213 (52.11%), Query Frame = 1
Query:  172 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDEL-----------------------MRNKFDPLWNSLVLGGVK----------NGQKYLGMVSMIGVNFEDSHVATGLGNHLARPILRDE---WHENLSYEDGVKLLEKCMRVLLYRDRSAVNKAADSKITEEGTNISQPYALKNVWGI 702
            +VTGT+VV+ +Y+DGI+M AD  GSYG   +   V+RI  +G  +LLG SGEISD Q L++ L  L                        R+K  PL  S+ +GG+             +K LG V+ +G  +    V TG+G +L  P LR+      E ++ E+ + L+E+ MR+L YRD +A N+     + ++G +IS PY +K  W +
Sbjct:   13 FVTGTTVVSFRYRDGIIMGADTRGSYGRLAKLSGVQRIFKVGDQTLLGMSGEISDMQYLVKTLTILTQEDNRRIDPKGYHKMIQRILYSARSKISPLNLSVCVGGLNAASDGDRRTHTREKMLGCVNHLGNFYFSDVVCTGIGGYLVLPFLRNRVEGREEEIAREEAIGLVEEAMRILCYRDCNASNEIQVGYVDDQGVHISDPYQIKTNWDV 225          
The following BLAST results are available for this feature:
BLAST of FC930130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PSB4_ARATH2.553e-7969.86Proteasome subunit beta type-4 OS=Arabidopsis thal... [more]
PSB4_BOVIN1.085e-3739.07Proteasome subunit beta type-4 OS=Bos taurus GN=PS... [more]
PSB4_HUMAN4.123e-3738.60Proteasome subunit beta type-4 OS=Homo sapiens GN=... [more]
PSB4_MOUSE5.385e-3738.60Proteasome subunit beta type-4 OS=Mus musculus GN=... [more]
PSB4_RAT1.567e-3638.53Proteasome subunit beta type-4 OS=Rattus norvegicu... [more]
PSB4_XENLA4.559e-3635.81Proteasome subunit beta type-4 (Fragment) OS=Xenop... [more]
PSB4_DICDI2.502e-3438.65Proteasome subunit beta type-4 OS=Dictyostelium di... [more]
PSB4_SCHPO4.718e-3336.70Probable proteasome subunit beta type-4 OS=Schizos... [more]
PSB4_YEAST6.598e-2735.35Proteasome component PRE4 OS=Saccharomyces cerevis... [more]
PSB4_ENCCU1.125e-2634.27Probable proteasome subunit beta type-4 OS=Encepha... [more]

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Properties
Property NameValue
Genbank descriptionC34004B03EF PostHarvC1 Citrus clementina cDNA clone C34004B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930130 ID=FC930130; Name=FC930130; organism=Citrus clementina; type=EST; length=710bp
GAAAACACAAGGCTTCTCAGTTCTCAGAAGTTAGATCGTGAAGCCTCAGC
TGATCAGCTTTGCTATTTACTGAGAAAGTGAATCAAATCTCAAAACGAAT
TAATGGAATCGATCCAAGCCAAACAAGGACTTGTCGGCCCTAACGACCCC
ATTCAAAGAACCCAGTTACCATATGTGACTGGTACATCTGTTGTTGCGCT
GAAGTACAAAGATGGCATATTAATGGCTGCTGACATGGGAGGTTCCTATG
GGTCAACAATCCGATACAAGAGTGTGGAACGGATTAAACCTATTGGAAAG
CATTCTCTACTGGGTGCCAGTGGAGAAATAAGTGATTTTCAGGAGCTTTT
GCGTAATCTTGATGAGCTTATGCGTAACAAGTTTGATCCATTGTGGAACT
CTCTTGTGCTTGGTGGAGTGAAAAATGGACAGAAATATCTTGGCATGGTA
TCAATGATAGGAGTGAACTTTGAGGACAGCCATGTTGCAACTGGGTTAGG
GAATCATCTTGCAAGGCCAATTCTTCGTGATGAATGGCATGAAAACTTGA
GTTATGAAGATGGCGTTAAGTTGCTGGAAAAGTGCATGCGTGTGCTCCTG
TATCGTGATAGATCTGCCGTCAACAAAGCTGCAGATAGCAAGATCACTGA
AGAAGGGACAAACATTTCCCAGCCCTACGCATTGAAGAACGTCTGGGGAA
TCACTGCATT
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