FC930130
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSB4_ARATH (Proteasome subunit beta type-4 OS=Arabidopsis thaliana GN=PBG1 PE=1 SV=2) HSP 1 Score: 295.049 bits (754), Expect = 2.553e-79 Identity = 146/209 (69.86%), Postives = 165/209 (78.95%), Query Frame = 1 Query: 154 QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELM----------------------------RNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGLGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKAADSKITEEGTNISQPYALKNVW 696 QRT PYVTGTS+VA+KYKDG+LMA+DMGGSYGST+RYK++ER+K IGKHSLLGASGEISDFQE+LR LDEL RNKF+PLWN+LVLGGVKNG+ YLGMVSMIGV+FED HVATG GNHLARPILRDEWH +LS+EDGVKLLEKCMRVLLYRDRSA+NK +KITEEG +SQPY+LK W Sbjct: 22 QRTLYPYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEISDFQEILRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKNGKSYLGMVSMIGVSFEDDHVATGFGNHLARPILRDEWHADLSFEDGVKLLEKCMRVLLYRDRSAINKLQIAKITEEGVTVSQPYSLKTYW 230
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSB4_BOVIN (Proteasome subunit beta type-4 OS=Bos taurus GN=PSMB4 PE=1 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.085e-37 Identity = 84/215 (39.07%), Postives = 129/215 (60.00%), Query Frame = 1 Query: 148 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELM----------------------------RNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGLGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKAADSKITEEGTNISQPYALKNVWGI 702 PI RTQ P VTGTSV+ LK++ G+++AADM GSYGS R++++ RI + ++LGASG+ +DFQ L + L +++ R+K +PLWN++V+GG +G+ +LG V M+GV +E +ATG G +LA+P+LR+ E LS + +L+E+CMRVL YRD + N+ + +TE+G I P + + W I Sbjct: 42 PITRTQNPMVTGTSVLGLKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRDARSYNRFQIATVTEKGVEIEGPLSAETNWDI 256
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSB4_HUMAN (Proteasome subunit beta type-4 OS=Homo sapiens GN=PSMB4 PE=1 SV=4) HSP 1 Score: 154.836 bits (390), Expect = 4.123e-37 Identity = 83/215 (38.60%), Postives = 128/215 (59.53%), Query Frame = 1 Query: 148 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELM----------------------------RNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGLGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKAADSKITEEGTNISQPYALKNVWGI 702 PI RTQ P VTGTSV+ +K++ G+++AADM GSYGS R++++ RI + ++LGASG+ +DFQ L + L +++ R+K +PLWN++V+GG +G+ +LG V M+GV +E +ATG G +LA+P+LR+ E LS + L+E+CMRVL YRD + N+ + +TE+G I P + + W I Sbjct: 42 PITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQIATVTEKGVEIEGPLSTETNWDI 256
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSB4_MOUSE (Proteasome subunit beta type-4 OS=Mus musculus GN=Psmb4 PE=1 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 5.385e-37 Identity = 83/215 (38.60%), Postives = 128/215 (59.53%), Query Frame = 1 Query: 148 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELM----------------------------RNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGLGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKAADSKITEEGTNISQPYALKNVWGI 702 PI RTQ P VTGTSV+ +K+ G+++AADM GSYGS R++++ RI + ++LGASG+ +DFQ L + L +++ R+K +PLWN++V+GG +G+ +LG V M+GV +E +ATG G +LA+P+LR+ E LS + +L+E+CMRVL YRD + N+ + +TE+G I P + + W I Sbjct: 42 PITRTQNPMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRDARSYNRFQIATVTEKGVEIEGPLSAQTNWDI 256
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSB4_RAT (Proteasome subunit beta type-4 OS=Rattus norvegicus GN=Psmb4 PE=1 SV=2) HSP 1 Score: 152.91 bits (385), Expect = 1.567e-36 Identity = 84/218 (38.53%), Postives = 127/218 (58.26%), Query Frame = 1 Query: 139 PNDPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELM----------------------------RNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGLGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKAADSKITEEGTNISQPYALKNVWGI 702 P PI RTQ P VTGTSV+ +K+ G+++AADM GSYGS R++++ RI + ++LGASG+ +DFQ L + L +++ R+K +PLWN+ V+GG G+ +LG V M+GV +E +ATG G +LA+P+LR+ E LS + +L+E+CMRVL YRD + N+ + +TE+G I P + + W I Sbjct: 38 PARPITRTQNPMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQVLGQMVIDEELFGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTKVIGGYAGGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRDARSYNRFQVATVTEKGVEIEGPLSAQTNWDI 255
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSB4_XENLA (Proteasome subunit beta type-4 (Fragment) OS=Xenopus laevis GN=psmb4 PE=2 SV=2) HSP 1 Score: 151.369 bits (381), Expect = 4.559e-36 Identity = 77/215 (35.81%), Postives = 129/215 (60.00%), Query Frame = 1 Query: 148 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELM----------------------------RNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGLGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKAADSKITEEGTNISQPYALKNVWGI 702 P++ T P VTGTSV+ +K+ G+++AADM GSYGS R++++ RI + ++++LGASG+ +D+Q L + +D+++ R+K +PLWN++V+GG NG+ +LG V +GV +E +ATG G +LA+P+LR+ E LS E+ +L+++CM+VL YRD + N+ + +TE G + P + + W I Sbjct: 20 PVRHTLNPMVTGTSVLGVKFDGGVIIAADMLGSYGSLARFRNISRIMKVNENTILGASGDYADYQYLKQVIDQMVIDEELVGDGHNYSPKAIHSWLTRVMYNRRSKMNPLWNTVVIGGFYNGESFLGYVDKLGVAYEAPTIATGFGAYLAQPLLREVTENKATLSKEEARQLVDRCMKVLYYRDARSYNRFEITTVTESGVEVEGPLSSETNWEI 234
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSB4_DICDI (Proteasome subunit beta type-4 OS=Dictyostelium discoideum GN=psmB4-1 PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.502e-34 Identity = 80/207 (38.65%), Postives = 118/207 (57.00%), Query Frame = 1 Query: 154 QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELM----------------------------RNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGLGNHLARPILRDEWHE--NLSYEDGVKLLEKCMRVLLYRDRSAVNKAADSKITEEGTNISQPYAL 684 Q+T P VTGTSV+A+KY G++M +DM SYGS R+ S ER+K G ++++GASGE SDFQ + L++L+ RN+ +PLWN+LV+ G + G+ +LG V ++G ++D + TG G+H+A P+LR E N++ E +L++ C+RVL YRD + K S EEG IS P L Sbjct: 35 QKTLDPIVTGTSVIAIKYDKGVVMGSDMLLSYGSLARFNSTERMKKFGGYTIVGASGEYSDFQSITNTLNDLVTDDHCMDDGSKLSSEEIWNYLARVLYNQRNRGNPLWNTLVVMGYQGGKSFLGKVDLVGTCYKDDIITTGYGSHIALPLLRKARDENPNMNLEQAKQLIQDCLRVLFYRDARSSKKIQISVAGEEGIEISGPIEL 241
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSB4_SCHPO (Probable proteasome subunit beta type-4 OS=Schizosaccharomyces pombe GN=SPBC577.10 PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 4.718e-33 Identity = 80/218 (36.70%), Postives = 119/218 (54.59%), Query Frame = 1 Query: 148 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDEL----------------------------MRNKFDPLWNSLVLGGV--KNGQKYLGMVSMIGVNFEDSHVATGLGNHLARPILR-----DEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKAADSKITEEGTNISQPYALKNVW 696 PIQRT P VTG+SV+ALK+ DG+++AAD SYGS R+ VER+ +G ++++GA G+ISD+Q++ R L++L RNK DP WN L++ GV +N + Y+ + G + +ATG HLA P+LR D W + LS E +++CMRVL YRD ++NK + + IT EG ++ + W Sbjct: 32 PIQRTVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQIQRLLEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAFADLRGTTYSAPAIATGFAMHLALPMLRKATDDDRW-KTLSKESARATIDECMRVLFYRDARSLNKFSVATITPEGIEFQTDQSVSSKW 248
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSB4_YEAST (Proteasome component PRE4 OS=Saccharomyces cerevisiae GN=PRE4 PE=1 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27 Identity = 70/198 (35.35%), Postives = 112/198 (56.57%), Query Frame = 1 Query: 148 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELM--------------------------------RNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGLGNHLARPIL-----RDEWHENLSYEDGVKLLEKCMRVLLYRD-RSAVN 624 P+ TQ P VTGTSV+++KY +G+++AAD GSYGS +R+ VER+ P+G ++++G SG+ISD Q + R L +L+ R+K +PLWN++++ GV+ NG ++L V+++GV + +ATG G H+A P+L R+ + + + + MRVL YRD RS+ N Sbjct: 30 PMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRN 227
BLAST of FC930130 vs. ExPASy Swiss-Prot
Match: PSB4_ENCCU (Probable proteasome subunit beta type-4 OS=Encephalitozoon cuniculi GN=PRE4 PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.125e-26 Identity = 73/213 (34.27%), Postives = 111/213 (52.11%), Query Frame = 1 Query: 172 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDEL-----------------------MRNKFDPLWNSLVLGGVK----------NGQKYLGMVSMIGVNFEDSHVATGLGNHLARPILRDE---WHENLSYEDGVKLLEKCMRVLLYRDRSAVNKAADSKITEEGTNISQPYALKNVWGI 702 +VTGT+VV+ +Y+DGI+M AD GSYG + V+RI +G +LLG SGEISD Q L++ L L R+K PL S+ +GG+ +K LG V+ +G + V TG+G +L P LR+ E ++ E+ + L+E+ MR+L YRD +A N+ + ++G +IS PY +K W + Sbjct: 13 FVTGTTVVSFRYRDGIIMGADTRGSYGRLAKLSGVQRIFKVGDQTLLGMSGEISDMQYLVKTLTILTQEDNRRIDPKGYHKMIQRILYSARSKISPLNLSVCVGGLNAASDGDRRTHTREKMLGCVNHLGNFYFSDVVCTGIGGYLVLPFLRNRVEGREEEIAREEAIGLVEEAMRILCYRDCNASNEIQVGYVDDQGVHISDPYQIKTNWDV 225 The following BLAST results are available for this feature:
BLAST of FC930130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930130 ID=FC930130; Name=FC930130; organism=Citrus clementina; type=EST; length=710bpback to top |