FC930315
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930315 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2) HSP 1 Score: 146.362 bits (368), Expect = 1.460e-34 Identity = 81/118 (68.64%), Postives = 88/118 (74.58%), Query Frame = 3 Query: 321 SLTFVPSAIATPNTVLSEEAFKRLGEFSENSGSLDGSVSDEDYESQTVSDEDELAISKLGLPGRLAESLEKRGITHLFPIQRAVFEPALQGRDLIARAKTGTGKTLAFGIPNTQRLTE 674 S VPSA+ATPN+VLSEEAFK LG + LDG D + D +ELAISKL LP RL ESLEKRGITHLFPIQRAV PALQGRD+IARAKTGTGKTLAFGIP +RLTE Sbjct: 54 SSLLVPSAVATPNSVLSEEAFKSLGLSDHDEYDLDG-----DNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTE 166
BLAST of FC930315 vs. ExPASy Swiss-Prot
Match: RH3_ORYSJ (DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 1.083e-29 Identity = 71/115 (61.74%), Postives = 84/115 (73.04%), Query Frame = 3 Query: 342 AIATPNTVLSEEAFKRLGEFSENSGSLDGSVSDEDYESQTVS----DEDELAISKLGLPGRLAESLEKRGITHLFPIQRAVFEPALQGRDLIARAKTGTGKTLAFGIPNTQRLTE 674 AIA+PN+VLSE AFKRL E +G+ ++ + V DEDELAI++LGLP +L +LEKRGITHLFPIQRAV PAL GRDLIARAKTGTGKTLAFGIP ++L E Sbjct: 54 AIASPNSVLSEHAFKRLQLSDEEEEEEEGAYGSDEEGVEAVGGGEGDEDELAIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLME 168
BLAST of FC930315 vs. ExPASy Swiss-Prot
Match: RH9_ORYSJ (DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica GN=Os12g0611200 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.059e-16 Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 3 Query: 471 EDELAISKLGLPGRLAESLEKRGITHLFPIQRAVFEPALQGRDLIARAKTGTGKTLAFGIP 653 E+ L ++KLG+ ++ L RGIT LFPIQRAV EPA+QG+D++ RAKTGTGKTLAFGIP Sbjct: 95 EEGLEVAKLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIP 155
BLAST of FC930315 vs. ExPASy Swiss-Prot
Match: RH53_ORYSJ (DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16 Identity = 41/75 (54.67%), Postives = 54/75 (72.00%), Query Frame = 3 Query: 462 VSDEDELAISKLGLPGRLAESLEKRGITHLFPIQRAVFEPALQGRDLIARAKTGTGKTLAFGIPNTQRLTEGYEQ 686 V +D L +++LG+ + E L RGIT LFPIQRAV +PA+QG+D+I RA+TGTGKTLAFGIP R+ E+ Sbjct: 78 VGGDDGLEVARLGISPWIVERLAARGITRLFPIQRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEK 152
BLAST of FC930315 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16 Identity = 53/137 (38.69%), Postives = 73/137 (53.28%), Query Frame = 3 Query: 243 ALIATSSVAKPLXXXXXXXXXXXXKQSLTFVPSAIATPNTVLSEEAFKRLGEFSENSGSLDGSVSDEDYESQTVSDEDELAISKLGLPGRLAESLEKRGITHLFPIQRAVFEPALQGRDLIARAKTGTGKTLAFGIP 653 ALI +S V L F S ++ +SE + +R+G+ SE+ G D LAIS+LG+ + ++L +GI LFPIQ+AV EPA++GRD+I RA+TGTGKTLAFGIP Sbjct: 44 ALIGSSDVKAGFPFGVEAKGIHFQSGPLDFRASMVSQAGFAISESSERRVGD-SESVGG------------------DGLAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIP 161
BLAST of FC930315 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.983e-15 Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 3 Query: 423 DGSVSDEDYESQTVSDEDELAISKLGLPGRLAESLEKRGITHLFPIQRAVFEPALQGRDLIARAKTGTGKTLAFGIP 653 DG + D + + D LAI+ LG+ + ++L+ RGI LFPIQ+AV EPA++GRD+I RA+TGTGKTLAFGIP Sbjct: 98 DGGIGDSESVGSS-GGGDGLAIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIP 173
BLAST of FC930315 vs. ExPASy Swiss-Prot
Match: DDX50_HUMAN (ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12 Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 3 Query: 402 SENSGSLDGSV---SDEDYESQTVSDEDELAISKLGLPGRLAESLEKRGITHLFPIQRAVFEPALQGRDLIARAKTGTGKTLAFGIPNTQRLTEGYE 683 S+ SLD S SD E ++ E A S + + L+ RG+T+LFPIQ F P +G+DLIA+A+TGTGKT +F IP +RL E Sbjct: 108 SKRVSSLDTSTHKSSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQE 204
BLAST of FC930315 vs. ExPASy Swiss-Prot
Match: DDX50_MOUSE (ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11 Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = 3 Query: 411 SGSLDGSVSDEDYESQTVSDEDELAISKLGLPGRLAESLEKRGITHLFPIQRAVFEPALQGRDLIARAKTGTGKTLAFGIPNTQRLTEGYE 683 S S + S + E ++ E A S + + L+ RG+T+LFPIQ F P +G+DLIA+A+TGTGKT +F IP +RL E Sbjct: 111 SSSENSHKSSDKAEETLTREQKEGAFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQE 201
BLAST of FC930315 vs. ExPASy Swiss-Prot
Match: DDX21_MOUSE (Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11 Identity = 35/105 (33.33%), Postives = 54/105 (51.43%), Query Frame = 3 Query: 372 EEAFKRLGEFSENSGSLDGSVSDEDYESQTVSDEDELAISKLGLPGRLAESLEKRGITHLFPIQRAVFEPALQGRDLIARAKTGTGKTLAFGIPNTQRLTEGYEQ 686 ++ + E NS G S + E + ++ E A S + + L+ RG+ LFPIQ F G+DLIA+A+TGTGKT +F IP ++L G ++ Sbjct: 222 KDGLSQPSEPKSNSSDAPGEESSSETEKEIPVEQKEGAFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQE 326 The following BLAST results are available for this feature:
BLAST of FC930315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930315 ID=FC930315; Name=FC930315; organism=Citrus clementina; type=EST; length=715bpback to top |