FC930324

Overview
NameFC930324
Unique NameFC930324
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930324 vs. ExPASy Swiss-Prot
Match: C3H6_ORYSJ (Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=Os01g0258700 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.450e-20
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 2
Query:    2 YVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLRPELIS 190
            Y Q G C++G ACK+DHPMG L YSPSA  L+DMP+APYP+G SI TLAPSS S DLRPE IS
Sbjct:  362 YAQNGYCRYGVACKYDHPMGTLGYSPSALPLSDMPIAPYPIGFSIATLAPSSPSPDLRPEYIS 424          
BLAST of FC930324 vs. ExPASy Swiss-Prot
Match: C3H5_ORYSJ (Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=Os01g0257400 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.884e-20
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 2
Query:    2 YVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLRPELI 187
            Y Q G CKFGP CKFDHPMG LSYSPSASS+ D+P+APYP+  ++  +AP S+SSDLRPE +
Sbjct:  354 YTQHGFCKFGPTCKFDHPMGTLSYSPSASSITDLPIAPYPLNYAVAPVAPPSSSSDLRPEYL 415          
BLAST of FC930324 vs. ExPASy Swiss-Prot
Match: C3H32_ARATH (Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 2
Query:    2 YVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTL--APSSASSDL 172
            YVQ G CKFG  CKFDHPMG + Y+PSASSLAD PVAPYPV S +G L  APSS+S++L
Sbjct:  344 YVQNGFCKFGSTCKFDHPMGTIRYNPSASSLADAPVAPYPVSSLLGALAAAPSSSSTEL 402          
BLAST of FC930324 vs. ExPASy Swiss-Prot
Match: C3H58_ARATH (Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis thaliana GN=At5g18550 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.357e-16
Identity = 47/65 (72.31%), Postives = 51/65 (78.46%), Query Frame = 2
Query:    2 YVQRGVCKFGPACKFDHPMG--MLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLRPELIS 190
            + Q G+CKFGPACKFDH +G   LSYSPS SSL DMPVAPYP  SS+GTLAPSS SSD   ELIS
Sbjct:  354 FAQHGICKFGPACKFDHSLGSSSLSYSPSPSSLTDMPVAPYP--SSLGTLAPSS-SSDQCTELIS 415          
BLAST of FC930324 vs. ExPASy Swiss-Prot
Match: C3H34_ARATH (Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis thaliana GN=At3g06410 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.959e-15
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 2
Query:    2 YVQRGVCKFGPACKFDHPMGM-LSYSPSASSLADMPVAPYPVGSS--IGTLAPSSASSDLRPELIS 190
            + Q G+CKFGPACKFDH M   LSYSPSASSL DMPVAPYP+GSS   G+ AP S+S++   E ++
Sbjct:  362 FAQHGICKFGPACKFDHSMSSSLSYSPSASSLTDMPVAPYPIGSSSLSGSSAPVSSSNEPTKEAVT 427          
The following BLAST results are available for this feature:
BLAST of FC930324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
C3H6_ORYSJ3.450e-2069.84Zinc finger CCCH domain-containing protein 6 OS=Or... [more]
C3H5_ORYSJ5.884e-2066.13Zinc finger CCCH domain-containing protein 5 OS=Or... [more]
C3H32_ARATH1.039e-1669.49Zinc finger CCCH domain-containing protein 32 OS=A... [more]
C3H58_ARATH1.357e-1672.31Zinc finger CCCH domain-containing protein 58 OS=A... [more]
C3H34_ARATH1.959e-1562.12Zinc finger CCCH domain-containing protein 34 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionC34006C03EF PostHarvC1 Citrus clementina cDNA clone C34006C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930324 ID=FC930324; Name=FC930324; organism=Citrus clementina; type=EST; length=704bp
CTATGTACAACGTGGAGTATGCAAGTTTGGGCCTGCTTGCAAATTTGATC
ATCCAATGGGAATGCTAAGCTACAGTCCATCTGCATCTTCTCTGGCTGAT
ATGCCAGTCGCACCATATCCTGTGGGATCTTCAATTGGCACTCTCGCCCC
GTCGTCCGCATCCTCAGATTTGCGGCCAGAACTTATTTCAGGATCGAGCA
AGGACTCTGTTTCAACTCGAATGTCTTCATCAGTTAGCATATCAAGTGGA
TCAGTTGGTTCAATTCTTTCAAAGAGTGGTCCTGTTCCTCATTCAAGCAT
GCAACAATCTGGCCAGAGTTCTGGTCCTTCAACTGCTGACGACAGCAGCG
CTGAGGCTCGTACTTGAAGCTAAGCACAAAGAGAGGCACTTTCTTCATTC
CTTTTTTCGATCAAATTCATGAACCAAAACTTATTTTTTCTGCAAGTCGT
CAAAATAGGAGGCTTCATTTCTGTTACAGTTCCACATTTCAGGTCTAGCC
CTCATTAGCTTTATGTTCATACAATCTTTATATGGCCATCCTTTTTATCT
TGAATAAGCCATGACCAACCTCGTATAGCCTTTACTCCTTGCTTTTGAAT
AACCATGAAAGAATCCACACTCCACAGTTCCATTAGGCAAAAATCTGTCT
TTGGCCCTCCAATTTTGGAATTGGTGCTTATTTATGGTCCAATCCTTTTC
GAAA
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