FC930334

Overview
NameFC930334
Unique NameFC930334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10278 contig Ccv1_Contig10278:9..634. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930334 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 4.829e-33
Identity = 79/168 (47.02%), Postives = 99/168 (58.93%), Query Frame = 3
Query:  135 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELK-------RSSNKKYSKPIVDDDFEADFQGFKXXXXXXXXXXXXXXXXXLMMADIKPFTFSAGRK----------------SHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 569
            MCGGAIIS +IPP    R  ++T E++WP+LK       + SNK+     +DDDFEADFQGFK                  +  ++KPF F+A  K                ++    V+  EQA+KS++RKRKNQYRGIRQRPWGKWAAEIRDP KG R WLGTF+T
Sbjct:    1 MCGGAIISDFIPPP---RSLRVTNEFIWPDLKNKVKASKKRSNKRSDFFDLDDDFEADFQGFKDDSAFDCEDDDD------VFVNVKPFVFTATTKPVASAFVSTGIYLVGSAYAKKTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDT 159          
BLAST of FC930334 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.107e-32
Identity = 79/162 (48.77%), Postives = 99/162 (61.11%), Query Frame = 3
Query:  135 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELKRS--SNKKYSKPI-----VDDDFEADFQGFKXXXXXXXXXXXXXXXXXLMMADIKPFTFSAGRK------SHGSTAVKHVE----QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 569
            MCGGAIIS +IPP    R +++T+E++WP+LK++   +KK SK        D +FEADFQGFK                  + AD+KPF F++  K      + GS   K V      A+KS  RKRKNQYRGIRQRPWGKWAAEIRDP +G R+WLGTF T
Sbjct:    1 MCGGAIISDFIPPP---RSRRVTSEFIWPDLKKNLKGSKKSSKNRSNFFDFDAEFEADFQGFKDDSSIDCDDDFDVGD---VFADVKPFVFTSTPKPAVSAAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKT 156          
BLAST of FC930334 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.248e-22
Identity = 66/158 (41.77%), Postives = 84/158 (53.16%), Query Frame = 3
Query:  135 MCGGAIISGYIPPTVPGRP---KKLTAEYLWPELKR----SSNKKYSKPIV---DDDFEADFQGFKXXXXXXXXXXXXXXXXXLMMADIKPFTFSAGRKSHGSTAVKHVE---QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 569
            MCGGAII       + G P   ++ T   LWPE K+       +++    V   D+DFEADF+ F+                 ++  +IKP  F         + +        A KS +RKRKNQ+RGIRQRPWGKWAAEIRDP KGVRVWLGTFN+
Sbjct:    1 MCGGAIIHH-----LKGHPEGSRRATEGLLWPEKKKPRWGGGGRRHFGGFVEEDDEDFEADFEEFEVDSGDSDLELGEEDDDDVV--EIKPAAFKRALSRDNLSTITTAGFDGPAAKSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNS 151          
BLAST of FC930334 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 8.544e-22
Identity = 63/145 (43.45%), Postives = 73/145 (50.34%), Query Frame = 3
Query:  135 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELKRSSNKKYSKPIVDDDFEADFQGFKXXXXXXXXXXXXXXXXXLMMADIKPFTFSAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 569
            MCGGAIIS Y P     + +KLTAE LW EL  S+               DF GF                     + + P      + +    AVK  +  +    RKRKN YRGIR+RPWGKWAAEIRDP KGVRVWLGTFNT
Sbjct:    1 MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAAD-------------DFWGF------------------YSTSKLHP----TNQVNVKEEAVKKEQATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNT 110          
BLAST of FC930334 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 3
Query:  441 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 569
            ++  +R+RKN YRGIRQRPWGKWAAEIRDP+KGVRVWLGTF T
Sbjct:   39 ERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKT 81          
BLAST of FC930334 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.250e-13
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 3
Query:  381 TFSAGRKSHGSTAVKHVEQAKKSTERK-RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 569
            T S+ R+   S   K  E   K  +RK +KN YRG+RQRPWGK+AAEIRDP +  RVWLGTF T
Sbjct:  104 TSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFET 167          
BLAST of FC930334 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.468e-13
Identity = 29/39 (74.36%), Postives = 37/39 (94.87%), Query Frame = 3
Query:  453 ERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 569
            ++K+ ++Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNT
Sbjct:   18 KKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNT 56          
BLAST of FC930334 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 3
Query:  375 PFTFSAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 569
            P +F+    SH     + + +A     R++K +YRG+RQRPWGKWAAEIRDP +  RVWLGTF+T
Sbjct:   45 PSSFARVDSSHNPIE-ESMSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDT 108          
BLAST of FC930334 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 3
Query:  432 EQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 569
            +Q +   ++ R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T
Sbjct:   25 DQHQPDQDQPRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET 70          
BLAST of FC930334 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12
Identity = 35/54 (64.81%), Postives = 38/54 (70.37%), Query Frame = 3
Query:  408 GSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNT 569
            GS   K  E +  S ER +K  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T
Sbjct:   42 GSAVTKECESSM-SLERPKK--YRGVRQRPWGKWAAEIRDPHKATRVWLGTFET 92          
The following BLAST results are available for this feature:
BLAST of FC930334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RAP22_ARATH4.829e-3347.02Ethylene-responsive transcription factor RAP2-2 OS... [more]
RA212_ARATH9.107e-3248.77Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF1_ORYSJ2.248e-2241.77Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RAP23_ARATH8.544e-2243.45Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF71_ARATH1.012e-1479.07Ethylene-responsive transcription factor ERF071 OS... [more]
EF109_ARATH4.250e-1356.25Ethylene-responsive transcription factor ERF109 OS... [more]
ERF73_ARATH9.468e-1374.36Ethylene-responsive transcription factor ERF073 OS... [more]
EF110_ARATH2.109e-1250.77Ethylene-responsive transcription factor ERF110 OS... [more]
EF113_ARATH3.598e-1263.04Ethylene-responsive transcription factor ERF113 OS... [more]
RAP26_ARATH4.699e-1264.81Ethylene-responsive transcription factor RAP2-6 OS... [more]

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Properties
Property NameValue
Genbank descriptionC34006D04EF PostHarvC1 Citrus clementina cDNA clone C34006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930334 ID=FC930334; Name=FC930334; organism=Citrus clementina; type=EST; length=626bp
CATTCACTAGACATCCGAAGAATCCAAAACTCTCTCAAGCCAACAAAAGC
AAATTTTACATTTAACCCATTCTCTCCTAAAAATCTTTTCTCTTTAGTGC
CTGAACAAACCAGAAGAAACGAGAAACCTTAACCATGTGTGGAGGTGCTA
TCATTTCGGGCTACATCCCGCCCACCGTGCCGGGCCGGCCAAAGAAGCTG
ACGGCGGAGTATCTCTGGCCGGAGCTGAAGAGGTCATCCAACAAGAAGTA
CTCAAAGCCGATCGTCGACGATGACTTCGAGGCTGATTTCCAAGGATTCA
AGGACGATGAAGAAGAGTCTGACGTTGATGGTGACGTGGACGTTGATGCC
GACTTGATGATGGCTGATATTAAGCCTTTCACTTTCTCAGCTGGTCGCAA
GTCTCATGGATCTACAGCCGTGAAGCACGTTGAACAAGCTAAAAAATCCA
CAGAAAGAAAGAGGAAGAATCAATATAGGGGAATTAGGCAGCGTCCATGG
GGAAAATGGGCTGCTGAGATCCGTGACCCCACAAAAGGGGTTCGTGTCTG
GCTAGGAACTTTCAATACCGCTGAAGAAGCCGCTAGGGCTTATGATGCCN
AGGCACGGAGGATCCGTGGGAAGAAA
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