FC930338

Overview
NameFC930338
Unique NameFC930338
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930338_ssr105 microsatellite FC930338_ssr105:105..116. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930338_ssr265 microsatellite FC930338_ssr265:265..274. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9941 contig Ccv1_Contig9941:53..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930338 vs. ExPASy Swiss-Prot
Match: CSK2E_ARATH (Putative casein kinase II subunit beta-4 OS=Arabidopsis thaliana GN=At2g44680 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.832e-38
Identity = 86/156 (55.13%), Postives = 99/156 (63.46%), Query Frame = 1
Query:  259 MYRERGTGG-------SKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGKDMSVLLGKHPADHQRDSRSASLSKNHAXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHG 705
            MY++R  GG       S+SE++ G +DRKRINDALDK L++SSPSTSR     KD   +     A  Q  SRS  +  +                        WISWFCNLRGNEFFCEVD+DYIQDDFNLCGLSGQVPYYDYALDLILDVESS+G
Sbjct:    1 MYKDRSGGGIMGGGGSSRSEILGGAIDRKRINDALDKHLKKSSPSTSRV-FTSKDKDSVPSTSTAKSQLHSRSPDVESD-------TDSEGSDVSGSEGDDTSWISWFCNLRGNEFFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVESSNG 148          
BLAST of FC930338 vs. ExPASy Swiss-Prot
Match: CSK2B_ARATH (Casein kinase II subunit beta OS=Arabidopsis thaliana GN=CKB1 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.131e-37
Identity = 93/162 (57.41%), Postives = 103/162 (63.58%), Query Frame = 1
Query:  259 MYRERGTGGSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGKDMSV---------LLGKHPADH--QRDSRSASLSKNH--AXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHG 705
            MYR+RGT  S+ EVV    DRKRINDAL    ER SPSTSR  +NGK             L+GK  +++   RDSRSASLSKN+  +                      WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLS  VPYY+YALDLILDVESS G
Sbjct:    1 MYRDRGTVNSRPEVV----DRKRINDAL----ERPSPSTSRQ-VNGKGKGTVTAATTTANLIGKQQSNNINHRDSRSASLSKNNTVSDDESDTDSEESDVSGSDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSQG 153          
BLAST of FC930338 vs. ExPASy Swiss-Prot
Match: CSK2C_ARATH (Casein kinase II subunit beta' OS=Arabidopsis thaliana GN=CKB2 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.111e-37
Identity = 91/156 (58.33%), Postives = 98/156 (62.82%), Query Frame = 1
Query:  259 MYRERGTGGSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGK----DMSVLLGKHPADHQRDSRSASLSKNH---AXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHG 705
            MYRERG  GSKSEVV    DRKRIN+  D    R S S S+  +NGK      SVL+GK     +  SRS S+SK +   A                      WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLS QVPYYDYALDLILDVESSHG
Sbjct:    1 MYRERGMVGSKSEVV----DRKRINEIHDN---RPSHSMSQP-VNGKGKVTSTSVLMGKQQLHDKESSRSGSISKTNISDAVDISDTDSEESEVSGSDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSHQVPYYDYALDLILDVESSHG 148          
BLAST of FC930338 vs. ExPASy Swiss-Prot
Match: CSK2D_ARATH (Casein kinase II subunit beta-3 OS=Arabidopsis thaliana GN=CKB3 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.527e-34
Identity = 79/159 (49.69%), Postives = 101/159 (63.52%), Query Frame = 1
Query:  259 MYRERGTGG----SKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTI-NGKDM------SVLLGKHPADHQRDSRSASLSKNHAXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSH 702
            MY+ER  GG    S+SE++ G +DRKRINDAL+K+LE+SS ST+ + + + KD       S        + + DS  + +S +                        WISWFCNLRGN+FFCEVD+DYIQDDFNLCGLSGQVPYYDYALDLILDV++S+
Sbjct:    1 MYKERSGGGGGGSSRSEILGGAIDRKRINDALNKKLEKSSTSTTTSRVFSSKDKDPFSFTSTKTQLPDVESETDSEGSDVSGSEGDDTS------------------WISWFCNLRGNDFFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVDASN 141          
BLAST of FC930338 vs. ExPASy Swiss-Prot
Match: CSK2B_XENLA (Casein kinase II subunit beta OS=Xenopus laevis GN=csnk2b PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 1
Query:  547 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVE 693
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLE 57          
BLAST of FC930338 vs. ExPASy Swiss-Prot
Match: CSK2B_RAT (Casein kinase II subunit beta OS=Rattus norvegicus GN=Csnk2b PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 1
Query:  547 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVE 693
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLE 57          
BLAST of FC930338 vs. ExPASy Swiss-Prot
Match: CSK2B_RABIT (Casein kinase II subunit beta OS=Oryctolagus cuniculus GN=CSNK2B PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 1
Query:  547 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVE 693
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLE 57          
BLAST of FC930338 vs. ExPASy Swiss-Prot
Match: CSK2B_PIG (Casein kinase II subunit beta OS=Sus scrofa GN=CSNK2B PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 1
Query:  547 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVE 693
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLE 57          
BLAST of FC930338 vs. ExPASy Swiss-Prot
Match: CSK2B_MOUSE (Casein kinase II subunit beta OS=Mus musculus GN=Csnk2b PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 1
Query:  547 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVE 693
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLE 57          
BLAST of FC930338 vs. ExPASy Swiss-Prot
Match: CSK2B_HUMAN (Casein kinase II subunit beta OS=Homo sapiens GN=CSNK2B PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 1
Query:  547 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVE 693
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLE 57          
The following BLAST results are available for this feature:
BLAST of FC930338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CSK2E_ARATH2.832e-3855.13Putative casein kinase II subunit beta-4 OS=Arabid... [more]
CSK2B_ARATH3.131e-3757.41Casein kinase II subunit beta OS=Arabidopsis thali... [more]
CSK2C_ARATH9.111e-3758.33Casein kinase II subunit beta' OS=Arabidopsis thal... [more]
CSK2D_ARATH5.527e-3449.69Casein kinase II subunit beta-3 OS=Arabidopsis tha... [more]
CSK2B_XENLA3.599e-1777.55Casein kinase II subunit beta OS=Xenopus laevis GN... [more]
CSK2B_RAT3.599e-1777.55Casein kinase II subunit beta OS=Rattus norvegicus... [more]
CSK2B_RABIT3.599e-1777.55Casein kinase II subunit beta OS=Oryctolagus cunic... [more]
CSK2B_PIG3.599e-1777.55Casein kinase II subunit beta OS=Sus scrofa GN=CSN... [more]
CSK2B_MOUSE3.599e-1777.55Casein kinase II subunit beta OS=Mus musculus GN=C... [more]
CSK2B_HUMAN3.599e-1777.55Casein kinase II subunit beta OS=Homo sapiens GN=C... [more]

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Properties
Property NameValue
Genbank descriptionC34006D11EF PostHarvC1 Citrus clementina cDNA clone C34006D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930338 ID=FC930338; Name=FC930338; organism=Citrus clementina; type=EST; length=707bp
GAATCCTCTCTCTTCCTCTCTAAATCTGTCATTCTCTTTGCCCTGTTTTT
TTAACTCAATAATAATCTCTAGCAAGAGACAGCATGGGCTGAGCCGCTAA
GCCTTATATATATATAAAAAAAAAAAAAAACACACACAAACTGCTTCCCA
TCAAAAACCCTAGGCAGGGTTAGTGTGGTAATTTCTCGCGCCATGTGTCG
GTGGTAATCGTGTAGCCTTTAATTAAAAAAAATCGTCATCGGCGAAGGAG
GATACAAGATGTATAGAGAGAGAGGGACCGGTGGGTCCAAGTCGGAAGTG
GTTGTCGGACCAGTTGATCGGAAGCGGATTAACGATGCATTAGATAAGCA
GCTGGAGAGATCTTCGCCCTCCACTTCGAGAACGACGATCAACGGCAAGG
ATATGTCCGTTCTCTTGGGGAAGCATCCGGCTGATCATCAGCGAGACTCT
CGCTCCGCTTCTCTCTCCAAAAATCATGCTTCTGATGAATCTGAAACAGA
CAGTGAAGAGTCAGATGTCAGTGGTTCTGAGGGAGATGACACATCTTGGA
TCTCATGGTTTTGCAATCTTCGAGGAAATGAATTCTTCTGTGAAGTGGAT
GATGACTATATACAAGATGATTTTAACCTCTGTGGGCTAAGCGGTCAAGT
TCCATATTATGATTATGCACTTGACTTGATTTTGGATGTTGAGTCCTCTC
ATGGTGA
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