FC930771
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930771 vs. ExPASy Swiss-Prot
Match: SSRA_ARATH (Translocon-associated protein subunit alpha OS=Arabidopsis thaliana GN=At2g21160 PE=2 SV=3) HSP 1 Score: 235.728 bits (600), Expect = 1.748e-61 Identity = 121/196 (61.73%), Postives = 148/196 (75.51%), Query Frame = 2 Query: 125 QVARCQSDSETGVAETEGGDLGIVGEDAQDFG-------DGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQ 691 QVARCQSD+E + + +VGE+ D D S PGV+TVC+FPKNSA++V AGEETELLVG+KN+G++ V V+ I+ASVHLP+DH LLVQNLT NNA++P S QATFPYIFAVS++LQPG FDLVG I+Y+V+ PYQS FYNGTIEVVESGG +S ESVFL+TLGI LL+L GLW + Q Sbjct: 20 QVARCQSDAEDHSSLVDD----VVGENTDDAVEEDDHDLDMNLSSFPGVETVCVFPKNSAKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRLNNASIPTSLQATFPYIFAVSQYLQPGAFDLVGYIIYDVEGKPYQSVFYNGTIEVVESGGLLSGESVFLLTLGIGLLLLLGLWAYSQ 211
BLAST of FC930771 vs. ExPASy Swiss-Prot
Match: SSRA_DICDI (Translocon-associated protein subunit alpha OS=Dictyostelium discoideum GN=ssr1 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.690e-17 Identity = 51/153 (33.33%), Postives = 80/153 (52.29%), Query Frame = 2 Query: 233 SPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQ 691 +P V IFP N + AAG E+LVG N+ + ++N+ I AS++ P D S+ +QN T F A V AT Y F S++L+P F L+ S+ Y+ + TF+N TI + E ++S FL+ LG+ + G ++G+ Sbjct: 34 TPTSDVSFSYIFPDNQDKNFAAGSVVEVLVGFTNNADKALNITHIFASLNHPQDFSVFIQNYTRGDFGIA-VEKGHHATLAYRFVPSEYLEPREFGLLISLEYQDGAQNFTQTFFNSTINITEKETSFDMDSFFLILLGLGFVGGIGYIVYGK 185
BLAST of FC930771 vs. ExPASy Swiss-Prot
Match: SSRA_RAT (Translocon-associated protein subunit alpha OS=Rattus norvegicus GN=Ssr1 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11 Identity = 54/180 (30.00%), Postives = 82/180 (45.56%), Query Frame = 2 Query: 146 DSETGVAETEGGDLGIVGEDAQDFGDGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 676 D E V E E DL E+ +D +P DT +F K A + LVG N G V ++ AS P D+ +QN T N VP QATF Y F ++ + F LV ++ Y +++ + +Q +N T+ V+E + E++F+ G+ LLV+ GL Sbjct: 51 DDEAEVEEDEPTDLAEEKEEEEDVSSEP-EASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTIVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVVVGL 226
BLAST of FC930771 vs. ExPASy Swiss-Prot
Match: SSRA_PONAB (Translocon-associated protein subunit alpha OS=Pongo abelii GN=SSR1 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.167e-11 Identity = 54/180 (30.00%), Postives = 83/180 (46.11%), Query Frame = 2 Query: 146 DSETGVAETEGGDLGIVGEDAQDFGDGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 676 D E V E E DL V + ++ G +P DT +F K A + LVG N G V ++ AS P D+ +QN T N VP QATF Y F ++ + F LV ++ Y +++ + +Q +N T+ V+E + E++F+ G+ LLV+ GL Sbjct: 51 DDEAEVEEDEPTDL--VEDKEEEDVSGEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGL 225
BLAST of FC930771 vs. ExPASy Swiss-Prot
Match: SSRA_HUMAN (Translocon-associated protein subunit alpha OS=Homo sapiens GN=SSR1 PE=1 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 2.167e-11 Identity = 54/180 (30.00%), Postives = 83/180 (46.11%), Query Frame = 2 Query: 146 DSETGVAETEGGDLGIVGEDAQDFGDGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 676 D E V E E DL V + ++ G +P DT +F K A + LVG N G V ++ AS P D+ +QN T N VP QATF Y F ++ + F LV ++ Y +++ + +Q +N T+ V+E + E++F+ G+ LLV+ GL Sbjct: 51 DDEAEVEEDEPTDL--VEDKEEEDVSGEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGL 225
BLAST of FC930771 vs. ExPASy Swiss-Prot
Match: SSRA_CANFA (Translocon-associated protein subunit alpha OS=Canis familiaris GN=SSR1 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11 Identity = 54/180 (30.00%), Postives = 83/180 (46.11%), Query Frame = 2 Query: 146 DSETGVAETEGGDLGIVGEDAQDFGDGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 676 D E V E E DL E+ G+ SP+ DT +F K A + LVG N G V ++ AS P D+ +QN T N VP QATF Y F ++ + F LV ++ Y +++ + +Q +N T+ ++E + E++F+ G+ LLV+ GL Sbjct: 51 DDEAEVEEDEPTDLAEDKEEEDVSGEPEASPS--ADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIEREDGLDGETIFMYMFLAGLGLLVVVGL 225
BLAST of FC930771 vs. ExPASy Swiss-Prot
Match: SSRA_BOVIN (Translocon-associated protein subunit alpha OS=Bos taurus GN=SSR1 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11 Identity = 53/180 (29.44%), Postives = 82/180 (45.56%), Query Frame = 2 Query: 146 DSETGVAETEGGDLGIVGEDAQDFGDGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 676 D E V E E DL + +D G +P DT +F K A + LVG N G V ++ AS P D+ +QN T N VP QATF Y F ++ + F LV ++ Y +++ + +Q +N T+ ++E + E++F+ G+ LLV+ GL Sbjct: 51 DDEAEVEEDEPTDLA--EDKEEDDVSGEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIEREDGLDGETIFMYMFLAGLGLLVVVGL 225 The following BLAST results are available for this feature:
BLAST of FC930771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930771 ID=FC930771; Name=FC930771; organism=Citrus clementina; type=EST; length=693bpback to top |