FC930855
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 2.299e-45 Identity = 71/143 (49.65%), Postives = 90/143 (62.94%), Query Frame = 1 Query: 142 ACPKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 A P K S + G + P+SK + W KT SNGS+ RCM+ W P NKKFE LSYLP L+ + + KE++Y+LK W+PCLEF+E G + R PGYYDGRYW MWKLPMFGC ++SQ+LNE+ EC K Sbjct: 18 AAPSKTGNSNVVSAFTGLKSMAQFPSSKTMSNA--GAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFEEDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAK 158 HSP 2 Score: 44.2838 bits (103), Expect = 2.299e-45 Identity = 17/29 (58.62%), Postives = 24/29 (82.76%), Query Frame = 3 Query: 567 KAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 KAYPNA+IR + F+N +Q QC+SF++ KP Sbjct: 158 KAYPNAFIRVIGFDNVRQVQCISFIVHKP 186
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 2.999e-45 Identity = 70/105 (66.67%), Postives = 83/105 (79.05%), Query Frame = 1 Query: 256 WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 W +KT +NGS+ CM+ W P NN KFE LSYLP LS D++AK+IDY++K GW PC+EFD G V RE S MPGYYDGRYWTMWKLPMFGC DS+ +L EI+ECKK Sbjct: 45 WQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQGTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKK 149 HSP 2 Score: 35.8094 bits (81), Expect = 2.999e-45 Identity = 13/23 (56.52%), Postives = 18/23 (78.26%), Query Frame = 3 Query: 585 YIRCLAFNNQKQGQCMSFLIQKP 653 YIRCL F+N +Q QC SF++ +P Sbjct: 156 YIRCLGFDNTRQVQCASFIVHQP 178
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 6.638e-45 Identity = 71/125 (56.80%), Postives = 96/125 (76.80%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK T+ + K ++ +S SNG + RCM+ W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC D++Q+L E++E KK Sbjct: 26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKK 149 HSP 2 Score: 40.0466 bits (92), Expect = 6.638e-45 Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP A+IR + F+N +Q QC+SF+ KP Sbjct: 148 KKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBSB_SOLTU (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 6.638e-45 Identity = 71/125 (56.80%), Postives = 96/125 (76.80%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK T+ + K ++ +S SNG + RCM+ W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC D++Q+L E++E KK Sbjct: 26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKK 149 HSP 2 Score: 40.0466 bits (92), Expect = 6.638e-45 Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP A+IR + F+N +Q QC+SF+ KP Sbjct: 148 KKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 6.638e-45 Identity = 70/125 (56.00%), Postives = 93/125 (74.40%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK + + K++ + SNG + RCM+ W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+PCLEF+ E G+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KK Sbjct: 26 FTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKK 150 HSP 2 Score: 40.0466 bits (92), Expect = 6.638e-45 Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +KAYP A+IR + F+N +Q QC+SF+ KP Sbjct: 149 KKAYPQAWIRIIGFDNVRQVQCISFIAYKP 178
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 6.643e-45 Identity = 71/125 (56.80%), Postives = 94/125 (75.20%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK S A PV + S SNG + +CMK W P+ K++E LSYLP+L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN+R PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK Sbjct: 20 FTGLK--SNAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKK 142 HSP 2 Score: 38.5058 bits (88), Expect = 6.643e-45 Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K YP A+IR + F+N +Q QC+SF+ KP Sbjct: 141 KKEYPQAWIRIIGFDNVRQVQCISFIASKP 170
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 6.646e-45 Identity = 68/129 (52.71%), Postives = 92/129 (71.32%), Query Frame = 1 Query: 193 SGYLGLKPTSKALLPVKDSIA---WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 S + GLK T++ K S A W KT SNG + RCM+ W P N KFE LSYLP+L+++ + KE++Y+L+ W+PCLEFD G + R+ +R PGYYDGRYW MWKLPMFGC ++SQ++NE++EC K Sbjct: 14 SAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAK 142 HSP 2 Score: 41.9726 bits (97), Expect = 6.646e-45 Identity = 16/29 (55.17%), Postives = 23/29 (79.31%), Query Frame = 3 Query: 567 KAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 KAYP A+IR + F+N +Q QC+SF++ KP Sbjct: 142 KAYPKAFIRVIGFDNVRQVQCISFIVHKP 170
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 8.657e-45 Identity = 71/125 (56.80%), Postives = 94/125 (75.20%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK S A PV + S SNG + +CMK W P+ K++E LSYLP+L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN+R PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK Sbjct: 20 FTGLK--SNAAFPVTKKVNDFSTLASNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKK 142 HSP 2 Score: 38.5058 bits (88), Expect = 8.657e-45 Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K YP A+IR + F+N +Q QC+SF+ KP Sbjct: 141 KKEYPQAWIRIIGFDNVRQVQCISFIASKP 170
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 1.127e-44 Identity = 71/125 (56.80%), Postives = 95/125 (76.00%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK + + K ++ +S SNG + RCM+ W PIN KK+E LSYLP L+D+ + KE++Y+LK GW+PCLEF+ E G+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+L E+QECKK Sbjct: 27 FTGLKSAATFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKK 150 HSP 2 Score: 38.891 bits (89), Expect = 1.127e-44 Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K+YP A+IR + F+N +Q QC+SF+ KP Sbjct: 149 KKSYPQAWIRIIGFDNVRQVQCISFIAYKP 178
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 1.470e-44 Identity = 71/125 (56.80%), Postives = 94/125 (75.20%), Query Frame = 1 Query: 199 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 + GLK S A PV + S SNG + +CMK W P+ K++E LSYLP+L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN+R PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK Sbjct: 20 FTGLK--SNAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKK 142 HSP 2 Score: 38.5058 bits (88), Expect = 1.470e-44 Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 +K YP A+IR + F+N +Q QC+SF+ KP Sbjct: 141 KKEYPQAWIRIIGFDNVRQVQCISFIASKP 170 The following BLAST results are available for this feature:
BLAST of FC930855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930855 ID=FC930855; Name=FC930855; organism=Citrus clementina; type=EST; length=716bpback to top |