FC931235

Overview
NameFC931235
Unique NameFC931235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931235 vs. ExPASy Swiss-Prot
Match: LONF1_HUMAN (LON peptidase N-terminal domain and RING finger protein 1 OS=Homo sapiens GN=LONRF1 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.003e-32
Identity = 72/174 (41.38%), Postives = 106/174 (60.92%), Query Frame = 3
Query:  243 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL--FITPRTCAVSVTLNSIIQKNFPEEYAERKSEHD---SLINFGVDLMPLFVMDVVIPCQRFPLHIFEPRYRLMVRR-IMEGNHRMGMVIIDPTTGSVADFACEVEITECEPLPDGRFVLEIEVVEDFR 746
            DF+C+LC++L +EP+TTPCGHSFC++CL + +D    CPLC+  L  ++  R   V+  L  +I K  P+E +ERK  +D   + ++     +P+FV  +  P    PLH+FEPRYRLM+RR I  G  + GM + D T  S AD+ C ++I     LPDGR V++    + FR
Sbjct:  476 DFECSLCMRLFFEPVTTPCGHSFCKNCLERCLDHAPYCPLCKESLKEYLADRRYCVTQLLEELIVKYLPDELSERKKIYDEETAELSHLTKNVPIFVCTMAYPTVPCPLHVFEPRYRLMIRRSIQTGTKQFGMCVSD-TQNSFADYGCMLQIRNVHFLPDGRSVVDTVGGKRFR 648          
BLAST of FC931235 vs. ExPASy Swiss-Prot
Match: LONF3_MOUSE (LON peptidase N-terminal domain and RING finger protein 3 OS=Mus musculus GN=Lonrf3 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.875e-30
Identity = 71/167 (42.51%), Postives = 100/167 (59.88%), Query Frame = 3
Query:  243 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLF--ITPRTCAVSVTLNSIIQKNFPEEYAERK----SEHDSLINFGVDLMPLFVMDVVIPCQRFPLHIFEPRYRLMVRRIME-GNHRMGMVIIDPTTGSVADFACEVEITECEPLPDGRFVLE 722
            D +C+LC++L YEP+TTPCGH+FC  CL + +D   KCPLC+ VL   +  R  + +V L  +I    PEE+ ERK     E + L N   + +P+FV  +  P    PLHIFEP YRLM+RR +E G  + GM + DP  G V ++ C +EI   +   DGR V++
Sbjct:  458 DLECSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDVLLQCLPSRKYSKNVILEELIATFLPEEFKERKRLYEEEMEELSNLNKN-VPIFVCTMAYPTVPCPLHIFEPCYRLMIRRCIETGTRQFGMCLGDPVKGFV-EYGCILEIRNVQFFSDGRSVVD 622          
BLAST of FC931235 vs. ExPASy Swiss-Prot
Match: LONF2_HUMAN (LON peptidase N-terminal domain and RING finger protein 2 OS=Homo sapiens GN=LONRF2 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 4.176e-30
Identity = 69/175 (39.43%), Postives = 102/175 (58.29%), Query Frame = 3
Query:  243 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL--FITPRTCAVSVTLNSIIQKNFPEEYAERKSEHD----SLINFGVDLMPLFVMDVVIPCQRFPLHIFEPRYRLMVRRIME-GNHRMGMVIIDPTTGSVADFACEVEITECEPLPDGRFVLEIEVVEDFR 746
            DF+C LC++LL+EP+TTPCGH+FC  CL + +D    CPLC+  L   +  R   ++V    +I +  P+E ++RK  +D     L N   D +P+FV  +  P    PLH+FEPRYRLM+RR ME G  R GM +     G ++++ C +EI +    PDG  V++   +  FR
Sbjct:  446 DFECALCMRLLFEPVTTPCGHTFCLKCLERCLDHAPHCPLCKDKLSELLASRNFNITVLAEELIFRYLPDELSDRKRIYDEEMSELSNLTRD-VPIFVCAMAFPTVPCPLHVFEPRYRLMIRRCMETGTKRFGMCLSAEHAG-LSEYGCMLEIKDVRTFPDGSSVVDAIGISRFR 618          
BLAST of FC931235 vs. ExPASy Swiss-Prot
Match: LONF3_MACFA (LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca fascicularis GN=LONRF3 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.535e-29
Identity = 69/167 (41.32%), Postives = 98/167 (58.68%), Query Frame = 3
Query:  243 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL--FITPRTCAVSVTLNSIIQKNFPEEYAERK----SEHDSLINFGVDLMPLFVMDVVIPCQRFPLHIFEPRYRLMVRRIME-GNHRMGMVIIDPTTGSVADFACEVEITECEPLPDGRFVLE 722
            D +C LC++L YEP+TTPCGH+FC  CL + +D   KCPLC+  L   +  R  + +V +  +I K  PEE  ER+     E + L N   + +P+FV  +  P    PLHIFEP YRLM+RR +E G  + GM + DP  G  A++ C +EI   +   DGR V++
Sbjct:  423 DLECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVIMEELIAKFLPEELKERRKLYEEEMEELSNLNKN-VPIFVCTMAYPTVPCPLHIFEPCYRLMIRRCIETGTRQFGMCLGDPVKG-FAEYGCILEIRNVQFFADGRSVVD 587          
BLAST of FC931235 vs. ExPASy Swiss-Prot
Match: LONF3_HUMAN (LON peptidase N-terminal domain and RING finger protein 3 OS=Homo sapiens GN=LONRF3 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.535e-29
Identity = 69/167 (41.32%), Postives = 98/167 (58.68%), Query Frame = 3
Query:  243 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVL--FITPRTCAVSVTLNSIIQKNFPEEYAERK----SEHDSLINFGVDLMPLFVMDVVIPCQRFPLHIFEPRYRLMVRRIME-GNHRMGMVIIDPTTGSVADFACEVEITECEPLPDGRFVLE 722
            D +C LC++L YEP+TTPCGH+FC  CL + +D   KCPLC+  L   +  R  + +V +  +I K  PEE  ER+     E + L N   + +P+FV  +  P    PLHIFEP YRLM+RR +E G  + GM + DP  G  A++ C +EI   +   DGR V++
Sbjct:  464 DLECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVIMEELIAKFLPEELKERRKLYEEEMEELSNLNKN-VPIFVCTMAYPTVPCPLHIFEPCYRLMIRRCIETGTRQFGMCLGDPVKG-FAEYGCILEIRNVQFFADGRSVVD 628          
BLAST of FC931235 vs. ExPASy Swiss-Prot
Match: YOXA_SCHPO (LON peptidase N-terminal domain and RING finger protein C14F5.10c OS=Schizosaccharomyces pombe GN=SPBC14F5.10c PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.304e-15
Identity = 50/181 (27.62%), Postives = 91/181 (50.28%), Query Frame = 3
Query:  243 DFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRAVLFITPRTC----AVSVTLNSIIQKNFPEEYAERKSEHDSLINFGVDLMPLFVMDVVIPCQRFPLHIFEPRYRLMVRRIMEGNHR--MGMVIIDPTTGS---------------VADFACEVEITECEPLPDGRFVLE 722
            + +C +C  +LY+P+ +PCGH+FC  CL Q++ +  +CP CR   F  P       A S ++ + ++  +P+ + ER+   +         +PLF+  +  P     LHIFE RY +M+++ +E + R  + M +   + G                 +++   +EI + EPL DGR ++E
Sbjct:  166 ELECQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQCPTCR---FGLPSPVVLEHAKSHSITTFLRDFYPDNWLERQKSWEE-EKEQESWLPLFISMLAYPRMPTFLHIFELRYHIMIKKCLETSKRFCIAMPLRARSDGHNEHRELRNARGQRLFCSEYGTILEIIQVEPLIDGRSLVE 342          
The following BLAST results are available for this feature:
BLAST of FC931235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LONF1_HUMAN2.003e-3241.38LON peptidase N-terminal domain and RING finger pr... [more]
LONF3_MOUSE1.875e-3042.51LON peptidase N-terminal domain and RING finger pr... [more]
LONF2_HUMAN4.176e-3039.43LON peptidase N-terminal domain and RING finger pr... [more]
LONF3_MACFA3.535e-2941.32LON peptidase N-terminal domain and RING finger pr... [more]
LONF3_HUMAN3.535e-2941.32LON peptidase N-terminal domain and RING finger pr... [more]
YOXA_SCHPO1.304e-1527.62LON peptidase N-terminal domain and RING finger pr... [more]
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Properties
Property NameValue
Genbank descriptionC34103A02EF PostHarvP1 Citrus clementina cDNA clone C34103A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931235 ID=FC931235; Name=FC931235; organism=Citrus clementina; type=EST; length=760bp
AGAACTTGCTCTAAAGGATGCTGAGAAGCTACTCAATCTTCAGAGTAATT
CAATGAAATCACACCTCCTAAAGGCCAATGCCCTCATTTTGTTGGAAAGA
TATGACATGGCCCGAGATGCTATTCTTTCAGGCCTGCAAGTTGATCCTTT
TAGTAATTCTCCAAGCTTCTCTACAGAATTTGGAGAGGACAACTGCCAGT
TTGATTGGGAGGAGAATTCATGGGACACCAGAACGTACAGATGACTTTGA
TTGCACACTTTGTCTGAAGCTGTTGTATGAACCTATTACAACCCCTTGTG
GGCATTCCTTTTGCCGATCATGTCTATTTCAGTCAATGGATCGTGGTAAC
AAATGTCCATTGTGCCGAGCAGTTCTTTTTATTACTCCTCGGACATGTGC
CGTCAGTGTGACACTAAACAGCATCATACAGAAGAATTTCCCTGAGGAAT
ATGCTGAAAGGAAGTCTGAACATGATAGTTTGATCAACTTCGGCGTTGAT
CTGATGCCTTTATTTGTTATGGATGTTGTTATTCCATGTCAGAGGTTTCC
ACTCCACATATTTGAACCGCGCTACAGACTTATGGTGAGAAGAATAATGG
AGGGAAATCATCGTATGGGAATGGTCATCATTGATCCTACAACAGGTTCT
GTTGCTGATTTTGCTTGTGAAGTGGAGATCACTGAGTGTGAACCACTTCC
AGATGGACGGTTTGTTTTAGAGATTGAAGTCGTCGAAGATTTTCGATCCT
TCGATCTTGG
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