FC931301
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931301 vs. ExPASy Swiss-Prot
Match: DUS1_SCHPO (tRNA-dihydrouridine synthase 1 OS=Schizosaccharomyces pombe GN=dus1 PE=2 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 2.726e-36 Identity = 70/112 (62.50%), Postives = 88/112 (78.57%), Query Frame = 2 Query: 389 WTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFAI--CKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGKYGAFL 718 + K+GRPK I+APMVD SELP+R+L RR GA+ Y+PM HSR+F ESE YRN+ F+ E+RPL +QFC NDPEI+L AA+ PYCD VD+NLGCPQ IA++GKYG+FL Sbjct: 12 YNKIGRPKRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRNKVFSTRTIPEERPLIIQFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFL 123
BLAST of FC931301 vs. ExPASy Swiss-Prot
Match: DUS1_YEAST (tRNA-dihydrouridine synthase 1 OS=Saccharomyces cerevisiae GN=DUS1 PE=1 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.160e-33 Identity = 70/112 (62.50%), Postives = 85/112 (75.89%), Query Frame = 2 Query: 395 KLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFAIC---KEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGKYGAFLM 721 K+GRP IVAPMVD SEL +R+L RRYGA AYTPMLH+++F S+KYR + ++ DRPL VQFCANDPE LL AA+ VE CD VD+NLGCPQ IA++G YG+FLM Sbjct: 25 KIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLDGSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLM 136
BLAST of FC931301 vs. ExPASy Swiss-Prot
Match: DUS1L_RAT (tRNA-dihydrouridine synthase 1-like OS=Rattus norvegicus GN=Dus1l PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.400e-32 Identity = 64/113 (56.64%), Postives = 83/113 (73.45%), Query Frame = 2 Query: 389 WTK-LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFA--ICKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGKYGAFL 718 W++ LG + +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E +C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL Sbjct: 10 WSRALGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFL 122
BLAST of FC931301 vs. ExPASy Swiss-Prot
Match: DUS1L_MOUSE (tRNA-dihydrouridine synthase 1-like OS=Mus musculus GN=Dus1l PE=2 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 3.119e-32 Identity = 64/113 (56.64%), Postives = 82/113 (72.57%), Query Frame = 2 Query: 389 WTK-LGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFA--ICKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGKYGAFL 718 W++ LG + +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E +C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG YGAFL Sbjct: 10 WSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFL 122
BLAST of FC931301 vs. ExPASy Swiss-Prot
Match: DUS1L_HUMAN (tRNA-dihydrouridine synthase 1-like OS=Homo sapiens GN=DUS1L PE=1 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.022e-31 Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 2 Query: 416 IVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEF--AICKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGKYGAFL 718 +VAPMVD SEL +R+L RR+GA+ YTPMLH+++F YR E +C EDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG YGAFL Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFL 122
BLAST of FC931301 vs. ExPASy Swiss-Prot
Match: DUS4L_HUMAN (tRNA-dihydrouridine synthase 4-like OS=Homo sapiens GN=DUS4L PE=2 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 6.746e-19 Identity = 50/102 (49.02%), Postives = 64/102 (62.75%), Query Frame = 2 Query: 416 IVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFAICKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGKYGAFLM 721 + APMV S+L FR L R+Y + YTPM+ + F +S K R+ EF + D PL VQF AND +L +AAR V PY + +DIN GCPQR A YGA L+ Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLI 131
BLAST of FC931301 vs. ExPASy Swiss-Prot
Match: DUS4L_MOUSE (tRNA-dihydrouridine synthase 4-like OS=Mus musculus GN=Dus4l PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.348e-18 Identity = 49/102 (48.04%), Postives = 62/102 (60.78%), Query Frame = 2 Query: 416 IVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFAICKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGKYGAFLM 721 + APMV S+L FR L R+Y + YTPM+ + F S K R+ EF + D PL VQF AND +L +AA V PY + +DIN GCPQR A YGA L+ Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRSIKARDSEFTTNQGDCPLIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLI 131
BLAST of FC931301 vs. ExPASy Swiss-Prot
Match: DUS4_YEAST (tRNA-dihydrouridine synthase 4 OS=Saccharomyces cerevisiae GN=DUS4 PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.346e-16 Identity = 44/107 (41.12%), Postives = 57/107 (53.27%), Query Frame = 2 Query: 401 GRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFAICKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGKYGAFLM 721 GRP I PMV S+LPFR LCR Y + Y+PM+ +R + +E R + + ED PL VQ N+ LL V PYCD + IN GCP + R G L+ Sbjct: 37 GRPVTIAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRNEHARISDLSTNNEDTPLIVQVGVNNVADLLKFVEMVAPYCDGIGINCGCPIKEQIREGIGCALI 143
BLAST of FC931301 vs. ExPASy Swiss-Prot
Match: YQI2_CAEEL (Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2 OS=Caenorhabditis elegans GN=C45G9.2 PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.191e-15 Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = 2 Query: 428 MVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFAICKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGKYGAFLM 721 MV S+L FR L R Y + +TPM++++ F ESEK R+ E ++C+ D PL VQF +DP +L AA V VD+N GCP+ R +G+ L+ Sbjct: 1 MVRYSKLAFRQLVRVYDVDVCFTPMIYAKNFIESEKCRSSELSVCEGDSPLIVQFATDDPFVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALL 98
BLAST of FC931301 vs. ExPASy Swiss-Prot
Match: DUS4_SCHPO (tRNA-dihydrouridine synthase 4 OS=Schizosaccharomyces pombe GN=dus4 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.534e-14 Identity = 46/106 (43.40%), Postives = 60/106 (56.60%), Query Frame = 2 Query: 404 RPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESEKYRNEEFAICKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGKYGAFLM 721 RP I APMV S+LPFR L R Y + YTPM+ ++ F K R +F+ D L +QF +DP IL AA+ V PY D + IN GCPQ A + G+ L+ Sbjct: 19 RPVHIAAPMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFLHP-KGRYFDFSTNDADASLILQFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAIQEGIGSALL 123 The following BLAST results are available for this feature:
BLAST of FC931301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931301 ID=FC931301; Name=FC931301; organism=Citrus clementina; type=EST; length=721bpback to top |