FC931866
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931866 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 3.468e-44 Identity = 101/166 (60.84%), Postives = 111/166 (66.87%), Query Frame = 1 Query: 253 SSPSRFVRNVAVSSEFDQEEDLLSD---EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGGDDLA 711 S SRF RNVA++SEF+ EED +D +FS DLKLFVGNLPF+VDSAQLA LFE+AGNVEMVEVIYDK+TGRSRGFGFVTMSSV EVEAAAQQFNGYEL+GRPLRVN NRVYVGNLSWG DD+A Sbjct: 54 SPASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMA 219 HSP 2 Score: 72.4034 bits (176), Expect = 2.680e-12 Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 1 Query: 334 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 579 GS +++VGNL + VD L LF G V VIYD+ +GRS+GFGFVT S +EV+ A + +G +L+GR +RV+ Sbjct: 197 GSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278
BLAST of FC931866 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 169.088 bits (427), Expect = 2.104e-41 Identity = 89/114 (78.07%), Postives = 99/114 (86.84%), Query Frame = 1 Query: 259 PSRFVRNVAVSSEFD-QEEDLLSDEDGS------NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 579 PSRFVRNVAVSS+F+ +E+D+ +D D S +FSPDLKLFVGNL F+VDSAQLA LFE+AGNVEMVEVIYDKVTGRSRGFGFVTMS+ EVEAAAQQFNGYE EGRPLRVN Sbjct: 60 PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVN 173 HSP 2 Score: 78.1814 bits (191), Expect = 4.884e-14 Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 1 Query: 334 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 579 GS +L+VGNL + VD L LF G V VIYD+ +GRS+GFGFVT+SS +EV+ A NG +L+GR +RV+ Sbjct: 250 GSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVS 331
BLAST of FC931866 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.364e-40 Identity = 95/151 (62.91%), Postives = 103/151 (68.21%), Query Frame = 1 Query: 262 SRFVRNVAVSSEFDQEEDLLSDEDG----SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGGD 702 SRFVR V +S +FDQ ED+ +DG NFSPDLK+FVGNLPFS DSA LA LFE AGNVEMVEVIYDK+TGRSRGFGFVTMSS EEVEAA QQFNGYEL+GR LRVN NRVYVGNL+WG D Sbjct: 53 SRFVRKVTLS-DFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN--SGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVD 200 HSP 2 Score: 77.0258 bits (188), Expect = 1.088e-13 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 1 Query: 334 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 579 G +F +++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT SS EEV A + +G +L GR +RV+ Sbjct: 181 GGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 262
BLAST of FC931866 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 4.850e-38 Identity = 95/161 (59.01%), Postives = 104/161 (64.60%), Query Frame = 1 Query: 250 PSS--PSRFVRNVAVSSEFDQEEDLLSDEDG----SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN----XXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGGD 702 PSS SRFVR V + +FDQ ED+ ++G NFSPDLK+FVGNL FS DSA LA LFE AGNVEMVEVIYDK+TGRSRGFGFVTMSS EEVEAA QQFNGYEL+GR LRVN NRVYVGNL+WG D Sbjct: 47 PSSCFSSRFVRKVTLP-DFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVD 206 HSP 2 Score: 77.0258 bits (188), Expect = 1.088e-13 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 1 Query: 334 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 579 G +F +++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT SS EEV A + +G +L GR +RV+ Sbjct: 187 GGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 268
BLAST of FC931866 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 1.843e-37 Identity = 93/167 (55.69%), Postives = 101/167 (60.48%), Query Frame = 1 Query: 262 SRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN-----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGGDDLA 711 S F VA+S FDQ ED + + FS DLKLFVGNLPFSVDSA LAGLFE AGNVEMVEVIYDK+TGRSRGFGFVTMS+ EEVEAA QQFNGYE++GR +RVN NRVYVGNLSWG DDLA Sbjct: 57 SSFSTRVALSG-FDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLA 222 HSP 2 Score: 76.2554 bits (186), Expect = 1.856e-13 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 1 Query: 334 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 579 G + +++VGNL + VD L LF GNV +V+YD+ +GRSRGFGFVT SS +EV A NG +L+GR +RV+ Sbjct: 200 GRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVS 281
BLAST of FC931866 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 9.147e-37 Identity = 91/167 (54.49%), Postives = 102/167 (61.08%), Query Frame = 1 Query: 262 SRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN-----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGGDDLA 711 S F VA+S +FDQ ED + + FS DLKLFVGNLPFSVDSA LAGLFE AGNVE+VEVIYDK++GRSRGFGFVTMS+ EEVEAA QQFNGYE++GR +RVN NRVYVGNLSWG DDLA Sbjct: 58 SSFSTRVALS-DFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLA 223 HSP 2 Score: 77.0258 bits (188), Expect = 1.088e-13 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 1 Query: 334 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 579 G + +++VGNL + VD L LF GNV +V+YD+ +GRSRGFGFVT SS +EV A NG +L+GR +RV+ Sbjct: 201 GRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVS 282
BLAST of FC931866 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.407e-23 Identity = 64/146 (43.84%), Postives = 80/146 (54.79%), Query Frame = 1 Query: 268 FVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGGDD 705 FV V + E D+ E +E+ D KLFVGNLP+ VDS LA LFE AG VE+ EVIY++ T +SRGFGFVTMS+VEE E A + +N Y++ GR L VN R+YVGN+ WG DD Sbjct: 107 FVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSY---------RIYVGNIPWGIDD 243 HSP 2 Score: 80.1073 bits (196), Expect = 1.285e-14 Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1 Query: 343 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 579 F +++VGN+P+ +D A+L LF G V V+YD+ TGRSRGFGFVTM+S E+ A +G L+GR +RVN Sbjct: 226 FEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVN 304
BLAST of FC931866 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 9.818e-23 Identity = 61/128 (47.66%), Postives = 74/128 (57.81%), Query Frame = 1 Query: 328 EDGSNFSP---DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGGD 702 E G FS + KLFVGNLP+ VDS +LAG+F+ AG VE+ EVIY++ T RSRGFGFVTMS+VEE E A + NGY+++GR L VN RVYVGNL W D Sbjct: 43 EGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSC---------RVYVGNLPWDVD 161 HSP 2 Score: 81.6481 bits (200), Expect = 4.418e-15 Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 1 Query: 340 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 579 +F P +++VGNLP+ VD+++L LF G V V+ D+ TGRSRGFGFVTMSS EV A +G L+GR +RVN Sbjct: 144 DFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVN 223
BLAST of FC931866 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.190e-21 Identity = 65/164 (39.63%), Postives = 83/164 (50.61%), Query Frame = 1 Query: 262 SRFVRNVAVSSEFDQEEDLLSDEDGSNF----------------SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGGDD 705 ++F V+V SE D L E G +F S D KLFVGNLP+ +DS LA LF+ AG VE+ EVIY++ T RSRGFGFVTMS+VEE + A + ++ Y+L GR L VN R+YVGN+ W DD Sbjct: 50 TQFPTFVSVLSEDDNTLVLDDQEQGGDFPSFVGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTY---------RIYVGNIPWDIDD 204 HSP 2 Score: 79.7221 bits (195), Expect = 1.679e-14 Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 1 Query: 343 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 579 F P +++VGN+P+ +D A+L +F G V V++D+ +GRSRGFGFVTMSS E+ A +G L+GR +RVN Sbjct: 187 FQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVN 265
BLAST of FC931866 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.047e-20 Identity = 62/139 (44.60%), Postives = 77/139 (55.40%), Query Frame = 1 Query: 292 SEFDQEEDLLSDE-DGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGGDD 705 SE D E +S+ + S + KLFVGNL + V+S LA LFE AG VE+ EVIY++ T +SRGFGFVTMSSV+E E A ++FN Y+L GR L VN RVYVGNL W D+ Sbjct: 128 SEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAF---------RVYVGNLPWDVDN 257 HSP 2 Score: 85.5001 bits (210), Expect = 3.059e-16 Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 1 Query: 343 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 579 + P +++VGNLP+ VD+ +L LF G V V+YD+ TGRSRGFGFVTMS V+E+ A +G LEGR +RVN Sbjct: 240 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVN 318 The following BLAST results are available for this feature:
BLAST of FC931866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931866 ID=FC931866; Name=FC931866; organism=Citrus clementina; type=EST; length=713bpback to top |