FC932263
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1) HSP 1 Score: 290.041 bits (741), Expect = 7.211e-78 Identity = 146/201 (72.64%), Postives = 157/201 (78.11%), Query Frame = 3 Query: 60 APKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662 A KQ KP VSRNPEL+RGIGK+SRSKMYHKRGLWAIKAKNGGVFP+H FYPADDVKKPL+NKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFK+NGVPLRRVNQ YVI TSTKVDISGVNV+KFDDKYF K+ E+ LPQEKKDDQK+VD + Sbjct: 3 AAKQRKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVAL 203
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1) HSP 1 Score: 278.87 bits (712), Expect = 1.662e-74 Identity = 137/195 (70.26%), Postives = 154/195 (78.97%), Query Frame = 3 Query: 78 PRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662 P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD FYPA+DVKKPLVN+RKPKPTKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ YVIGTSTK+DISGVN +KFDDKYF K E+ +PQEKK+DQK+VD + Sbjct: 8 PKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAAL 202
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1) HSP 1 Score: 275.018 bits (702), Expect = 2.400e-73 Identity = 139/202 (68.81%), Postives = 153/202 (75.74%), Query Frame = 3 Query: 57 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662 M KQ P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD FYPA+DVKKPL N+R KPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ YVIGTSTKVDISGV +DKFDDKYF K E+ +PQ KKDDQK+VD + Sbjct: 1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAAL 202
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1) HSP 1 Score: 270.011 bits (689), Expect = 7.722e-72 Identity = 137/202 (67.82%), Postives = 151/202 (74.75%), Query Frame = 3 Query: 57 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662 M KQ +V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD FYPA+DVKKPL N+R KP KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ YVIGTSTKVDISGV +DKFDDKYF K E+ +PQ KKDDQK+VD + Sbjct: 1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAAL 202
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6_HUMAN (60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3) HSP 1 Score: 146.362 bits (368), Expect = 1.288e-34 Identity = 96/232 (41.38%), Postives = 124/232 (53.45%), Query Frame = 3 Query: 63 PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDK-FDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662 PK+GKP SRNP L+RGIG++SRS MY ++ ++ K KNGG +YP +DV + L++ K KP KLRASITPGT+LIIL GR +GKRVVFLKQL SGLLLV+GP +N VPLRR +Q +VI TSTK+DIS V + K D YF K+ R + +++K DQK+VD+ I Sbjct: 37 PKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLR-KPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQI 257
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6_CHILA (60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3) HSP 1 Score: 146.362 bits (368), Expect = 1.288e-34 Identity = 98/242 (40.50%), Postives = 128/242 (52.89%), Query Frame = 3 Query: 33 AQQKRVASMAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDK-FDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662 A++ V + K+G+P SRNP L+RGIG++SRS MY ++ L+ K KNGG +YP +DV + L++ K KP KLRASITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP +N VPLRR +Q +VI TSTK+DIS V + K D YF K+ R + +++K DQK+VD+ I Sbjct: 27 AKKANVKAKKSKKGQPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYTAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLR-KPRHQEGEIFDTEKERYQISEQRKVDQKAVDSQI 257
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3) HSP 1 Score: 145.976 bits (367), Expect = 1.682e-34 Identity = 95/231 (41.13%), Postives = 124/231 (53.68%), Query Frame = 3 Query: 66 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNV-DKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662 K+GKP SRNP L+RGIG++SRS MY ++ L+ K KNGG +YP +DV + L++ K KP KLRASITPGT+LIIL GR +GKRV+FLKQL SGLLLV+GP +N VPLRR +Q +VI TSTK+DISGV + + D YF K+ R + +++K DQK+VD+ I Sbjct: 34 KKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLR-KPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQI 253
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6_BOVIN (60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3) HSP 1 Score: 145.976 bits (367), Expect = 1.682e-34 Identity = 96/231 (41.56%), Postives = 124/231 (53.68%), Query Frame = 3 Query: 66 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNV-DKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662 K+GKP SRNP L+RGIG++SRS MY ++ L+ K KNGG +YP +DV + L++ K KP KLRASITPGT+LIIL GR +GKRVVFLKQL SGLLLV+GP +N VPLRR +Q +VI TSTK+DISGV + + D YF K+ R + +++K DQK+VD+ I Sbjct: 37 KKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLR-KPRHQEGEIFDTEREKYEITEQRKVDQKAVDSQI 256
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3) HSP 1 Score: 142.895 bits (359), Expect = 1.424e-33 Identity = 97/233 (41.63%), Postives = 122/233 (52.36%), Query Frame = 3 Query: 63 PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDK-FDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662 PK+ KP SRNP L+RGIG++SRS MY ++ L+ K KNGG +YP +DV + L++ K KP +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP IN VPLRR +Q +VI TSTKVDIS V + K D YF K+ R + +++K DQK+VD I Sbjct: 44 PKKAKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLR-KPRHQEGEIFDTEKEKYEITEQRKADQKAVDLQI 265
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5) HSP 1 Score: 139.428 bits (350), Expect = 1.574e-32 Identity = 98/242 (40.50%), Postives = 127/242 (52.48%), Query Frame = 3 Query: 42 KRVASMAPK--QGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDK-FDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662 K+ +S A K + KP SRNP L+RGIG++SRS MY ++ L+ K KNGG +YP +DV + L++ K KP +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP +N VPLRR +Q +VI TSTKVDIS V + K D YF K+ R + +++K DQK+VD+ I Sbjct: 37 KKSSSKAKKLRKSKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLR-KPRHQEGEIFDTEKEKYEITEQRKADQKAVDSQI 267 The following BLAST results are available for this feature:
BLAST of FC932263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932263 ID=FC932263; Name=FC932263; organism=Citrus clementina; type=EST; length=665bpback to top |