FC932388

Overview
NameFC932388
Unique NameFC932388
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RL74_ARATH (60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 4.740e-97
Identity = 173/207 (83.57%), Postives = 192/207 (92.75%), Query Frame = 1
Query:    4 VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKRDAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKLKAPLGGL 624
            VPESVLKK+KR EEWALAKKQELE +KK   E RKLI+NRAKQY+KE+ E+E+ LIQLKR+AKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYGYPNLKSV+ELIYKRG+GKL+ QR ALTDNSI+++ LGK GIIC+EDLI EIMTVGPHFKEA +FLWPF+LKAPLGG+
Sbjct:   10 VPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGM 216          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RL72_ARATH (60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 2.353e-96
Identity = 173/207 (83.57%), Postives = 191/207 (92.27%), Query Frame = 1
Query:    4 VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKRDAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKLKAPLGGL 624
            VPESVLKK+KR EEWAL KKQ +E +KK   E+RKLI+ RA+QY+KE+AE+EK LI LKR+AKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNML RVEPYVTYG+PNLKSV+ELIYKRGYGKL+ QRIALTDNSI+E+ALGK GIIC EDLI EI+TVGPHFKEA +FLWPF+LKAPLGGL
Sbjct:    8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPHFKEANNFLWPFQLKAPLGGL 214          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RL73_ARATH (60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 1.992e-95
Identity = 172/207 (83.09%), Postives = 191/207 (92.27%), Query Frame = 1
Query:    4 VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKRDAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKLKAPLGGL 624
            VPESVLKK KR EEWALAKK E   +KK  +E+RKLI+ RA+QYAKE+AE++  LI+LKR+AKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYGYPNLKSV+ELIYKRGYGKL+ QRIALTDNSI+++ALGK GIIC+EDLI EIMTVGPHFKEA +FLWPF+LKAPLGGL
Sbjct:    8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGL 214          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RL7_NEUCR (60S ribosomal protein L7 OS=Neurospora crassa GN=rpl-7 PE=3 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 1.345e-67
Identity = 126/206 (61.17%), Postives = 160/206 (77.67%), Query Frame = 1
Query:    4 VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKRDAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKLKAPLGG 621
            VPE++LKK+K  E+    ++ E+E  K    E R +I+ RA+ Y KE+ + E+  I+L+R AK  G F++  EAKL+F+IRI+GIN I PK +KILQLLRL QI NGVF++V KAT  M+  VEP+V YGYPNLKSV+ELIYKRGYGK++KQR+ALTDNSIIE+ LGK+GIICMEDLI EI TVGP+FK+A +FLWPFKL  P GG
Sbjct:   13 VPETLLKKRKSQEKARAERQAEIEKKKAANKEKRAVIFKRAETYVKEYRDVEREKIRLQRAAKQDGSFHIPAEAKLIFLIRIKGINKIPPKPRKILQLLRLLQINNGVFVRVTKATAEMIKIVEPWVAYGYPNLKSVKELIYKRGYGKVNKQRVALTDNSIIEENLGKYGIICMEDLIHEIYTVGPNFKQASNFLWPFKLSNPTGG 218          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RL7_MOUSE (60S ribosomal protein L7 OS=Mus musculus GN=Rpl7 PE=2 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 2.537e-66
Identity = 127/210 (60.48%), Postives = 160/210 (76.19%), Query Frame = 1
Query:    4 VPESVLKKQKRNEEWA---LAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKRDAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKLKAPLGGL 624
            VPE++ KK++   E     L KK  L+T +K +   RKLIY +AK Y KE+ +  +  I++ R A+  G FYV  E KL F+IRIRGIN + PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDNS+I ++LGKFGIICMEDLI EI TVG  FKEA +FLWPFKL +P GG+
Sbjct:   36 VPETLKKKRRNFAELKVKRLRKKFALKTLRKAR---RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGM 242          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RL7_RAT (60S ribosomal protein L7 OS=Rattus norvegicus GN=Rpl7 PE=1 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 3.313e-66
Identity = 126/210 (60.00%), Postives = 160/210 (76.19%), Query Frame = 1
Query:    4 VPESVLKKQKRNEEWA---LAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKRDAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKLKAPLGGL 624
            VPE++ KK++   E     L KK  L+T +K +   RKLIY +AK Y KE+ +  +  I++ R A+  G FYV  E KL F+IRIRGIN + PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDNS++ ++LGKFGIICMEDLI EI TVG  FKEA +FLWPFKL +P GG+
Sbjct:   26 VPETLKKKRRNFAELKVKRLRKKFALKTLRKAR---RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGM 232          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RL7_BOVIN (60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 4.327e-66
Identity = 121/207 (58.45%), Postives = 157/207 (75.85%), Query Frame = 1
Query:    4 VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKRDAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKLKAPLGGL 624
            VPE++ KK+K   E  + + ++    K  +   RKLIY +AK Y KE+ +  +  I++ R A+  G FYV  E KL F+IRIRGIN + PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDN++I ++LGK+GIICMEDLI EI TVG  FKEA +FLWPFKL +P GG+
Sbjct:   14 VPETLKKKRKNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGM 220          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RL7_PONAB (60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 9.640e-66
Identity = 120/207 (57.97%), Postives = 157/207 (75.85%), Query Frame = 1
Query:    4 VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKRDAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKLKAPLGGL 624
            VPE++ KK++   E  + + ++    K  +   RKLIY +AK Y KE+ +  +  I++ R A+  G FYV  E KL F+IRIRGIN + PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDN++I ++LGK+GIICMEDLI EI TVG  FKEA +FLWPFKL +P GG+
Sbjct:   13 VPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGM 219          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RL7_MACFA (60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 9.640e-66
Identity = 120/207 (57.97%), Postives = 157/207 (75.85%), Query Frame = 1
Query:    4 VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKRDAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKLKAPLGGL 624
            VPE++ KK++   E  + + ++    K  +   RKLIY +AK Y KE+ +  +  I++ R A+  G FYV  E KL F+IRIRGIN + PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDN++I ++LGK+GIICMEDLI EI TVG  FKEA +FLWPFKL +P GG+
Sbjct:   13 VPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEICTVGKRFKEANNFLWPFKLSSPRGGM 219          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RL7_HUMAN (60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 9.640e-66
Identity = 120/207 (57.97%), Postives = 157/207 (75.85%), Query Frame = 1
Query:    4 VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKRDAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKLKAPLGGL 624
            VPE++ KK++   E  + + ++    K  +   RKLIY +AK Y KE+ +  +  I++ R A+  G FYV  E KL F+IRIRGIN + PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDN++I ++LGK+GIICMEDLI EI TVG  FKEA +FLWPFKL +P GG+
Sbjct:   14 VPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGM 220          
The following BLAST results are available for this feature:
BLAST of FC932388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL74_ARATH4.740e-9783.5760S ribosomal protein L7-4 OS=Arabidopsis thaliana... [more]
RL72_ARATH2.353e-9683.5760S ribosomal protein L7-2 OS=Arabidopsis thaliana... [more]
RL73_ARATH1.992e-9583.0960S ribosomal protein L7-3 OS=Arabidopsis thaliana... [more]
RL7_NEUCR1.345e-6761.1760S ribosomal protein L7 OS=Neurospora crassa GN=r... [more]
RL7_MOUSE2.537e-6660.4860S ribosomal protein L7 OS=Mus musculus GN=Rpl7 P... [more]
RL7_RAT3.313e-6660.0060S ribosomal protein L7 OS=Rattus norvegicus GN=R... [more]
RL7_BOVIN4.327e-6658.4560S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=... [more]
RL7_PONAB9.640e-6657.9760S ribosomal protein L7 OS=Pongo abelii GN=RPL7 P... [more]
RL7_MACFA9.640e-6657.9760S ribosomal protein L7 OS=Macaca fascicularis GN... [more]
RL7_HUMAN9.640e-6657.9760S ribosomal protein L7 OS=Homo sapiens GN=RPL7 P... [more]

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Properties
Property NameValue
Genbank descriptionC34208A12EF PostHarveN Citrus clementina cDNA clone C34208A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932388 ID=FC932388; Name=FC932388; organism=Citrus clementina; type=EST; length=624bp
CCAGTTCCAGAGTCTGTCTTGAAGAAGCAGAAGAGGAATGAGGAATGGGC
TTTGGCAAAGAAGCAGGAGCTTGAAACTTCCAAGAAGAACAAGCTCGAGA
GTAGGAAGCTGATTTACAATAGGGCTAAGCAGTATGCAAAGGAGTTTGCT
GAGCAGGAAAAGGTGTTGATTCAATTGAAGCGTGATGCTAAATTGAAAGG
AGGGTTTTATGTTGACCCTGAAGCTAAGCTTTTGTTTATCATCCGTATCC
GTGGTATCAATGCCATTGACCCAAAGACAAAGAAGATTTTGCAGCTTTTA
CGTTTAAGACAGATCTTCAATGGAGTTTTTCTTAAAGTGAACAAAGCTAC
CATGAACATGCTTCATAGGGTTGAACCTTACGTCACCTATGGATACCCCA
ATTTGAAGAGTGTTAGGGAGCTCATTTACAAGAGGGGATATGGAAAGCTA
GATAAGCAGAGAATTGCTTTGACCGATAACTCAATTATTGAGAAGGCTTT
GGGCAAGTTCGGTATCATCTGCATGGAAGACCTGATCCGTGAGATTATGA
CAGTGGGACCTCATTTTAAGGAGGCTAAACACTTTTTATGGCCATTTAAG
CTCAAGGCACCATTGGGTGGCCTG
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