FC932419

Overview
NameFC932419
Unique NameFC932419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length637
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_DICDI (Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium discoideum GN=med6 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.189e-27
Identity = 67/181 (37.02%), Postives = 105/181 (58.01%), Query Frame = 2
Query:  104 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY-VDAENDGGTPLHSKAGKETIDLKRSKRVDQILALLQRKLP 634
            D+T + +RD LWL  YPL+   I  YF+ S FYD+ CNNEQL+M+    LD+S L  M G+EY L + +EP  F+I K+ R  P  V     YYV++G+IYQAP+L  VF +R+ +++ ++ +AF + +S +      GY ++ +          A      ++ +KR+DQ++  L  K P
Sbjct:   65 DLTQVMWRDPLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQR---LDLSALKNMDGLEYELIKFVEPSFFLIAKQTRISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISHLSEAFNSISSIVNWDIVNGYSLNLDPSNQQEKSKLAAYSRKQIEDTKRLDQLINSLFIKFP 242          
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_MOUSE (Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus GN=Med6 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.123e-24
Identity = 70/187 (37.43%), Postives = 105/187 (56.15%), Query Frame = 2
Query:  104 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKRSKRVDQILALLQRKLPP 637
            ++ GI + D  W+    L+   + DYF+   + FYDRTCNNE ++M+    L +  L++M GIEY+L    EP LF+IRK++R  P +V P+  YY++ G IYQAP L +V ++R+  A+H IQ AF  A S        GY     D E        +K  +E   + + +RVD +L  L++K PP
Sbjct:    9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQEKVKPKAKRKEEPSSIFQRQRVDALLIDLRQKFPP 190          
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_HUMAN (Mediator of RNA polymerase II transcription subunit 6 OS=Homo sapiens GN=MED6 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.123e-24
Identity = 70/187 (37.43%), Postives = 105/187 (56.15%), Query Frame = 2
Query:  104 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKRSKRVDQILALLQRKLPP 637
            ++ GI + D  W+    L+   + DYF+   + FYDRTCNNE ++M+    L +  L++M GIEY+L    EP LF+IRK++R  P +V P+  YY++ G IYQAP L +V ++R+  A+H IQ AF  A S        GY     D E        +K  +E   + + +RVD +L  L++K PP
Sbjct:    9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDALLLDLRQKFPP 190          
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_BOVIN (Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus GN=MED6 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.502e-24
Identity = 69/187 (36.90%), Postives = 104/187 (55.61%), Query Frame = 2
Query:  104 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKRSKRVDQILALLQRKLPP 637
            ++ GI + D  W+    L+   + DYF+   + FYDRTCNNE ++M+    L +  L++M G+EY+L    EP LF+IRK++R  P +V P+  YY++ G IYQAP L +V ++R+  A+H IQ AF  A S        GY     D E         K  +E   + + +RVD +L  L++K PP
Sbjct:    9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKVKRKEEPSSIFQRQRVDALLLDLRQKFPP 190          
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_PONAB (Mediator of RNA polymerase II transcription subunit 6 OS=Pongo abelii GN=MED6 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.268e-24
Identity = 69/187 (36.90%), Postives = 105/187 (56.15%), Query Frame = 2
Query:  104 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKRSKRVDQILALLQRKLPP 637
            ++ GI + D  W+    L+   + DYF+   + FYDRTCNNE ++M+    L +  L++M GIEY+L    EP LF+IRK++R  P +V P+  YY++ G IYQAP L +V ++R+  A+H IQ AF  A S        GY     + E        +K  +E   + + +RVD +L  L++K PP
Sbjct:    9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKEHEEQDKVRPKAKRKEEPSSIFQRQRVDALLLDLRQKFPP 190          
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_ANOGA (Mediator of RNA polymerase II transcription subunit 6 OS=Anopheles gambiae GN=MED6 PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.373e-22
Identity = 66/187 (35.29%), Postives = 101/187 (54.01%), Query Frame = 2
Query:  116 ICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY---------VDAENDGGTPLHSKAGKETIDLKRSKRVDQILALLQRKLP 634
            I + D  W+    L+   + DYF+   + FYDRTCNNE +RM+      +  L+ MTG+EY+   V +P L+VIRK+ R  P + TPM  YY++ G++YQAP L +VF++RI   +H++Q AF  A+S        GY         +  +    T   +   +E   + + +RVD +L  L RK P
Sbjct:   19 ISWHDSNWIPV--LNPGNVMDYFSEKSNPFYDRTCNNEIVRMQR---QSLELLNNMTGVEYIPLHVQDPILYVIRKQHRHSPTEATPMADYYIIAGTVYQAPDLASVFNSRILSTVHHLQTAFDEASSYSRYHPSKGYSWDFSSNKAIAEKTKTQTKKEAPVKEEPSSIFQRQRVDMLLGDLLRKFP 200          
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_DANRE (Mediator of RNA polymerase II transcription subunit 6 OS=Danio rerio GN=med6 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.342e-22
Identity = 67/187 (35.83%), Postives = 103/187 (55.08%), Query Frame = 2
Query:  104 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKRSKRVDQILALLQRKLPP 637
            ++ GI + D  W+    L+ + + +YF+   + FYDRTCNNE ++M+      +  L+++ G+EY+L    EP L++IRK++R  P +V P+  YY++ G +YQAP L +V S+R   A+H IQ AF  A S        GY     D E        SK  +E   L + +RVD +L  L+ K PP
Sbjct:    9 NLLGISWVDSGWVPI--LNPSNVLEYFSERSNPFYDRTCNNEVVKMQRS---TLDHLTQLVGVEYILLHTQEPILYIIRKQQRQSPTQVIPLADYYIIAGVVYQAPDLGSVISSRALSAVHGIQSAFDEAMSFCRYHPSKGYWWHFKDQEEKERVKPKSKRKEEPSSLFQRQRVDTLLLDLRNKFPP 190          
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_DROME (Mediator of RNA polymerase II transcription subunit 6 OS=Drosophila melanogaster GN=MED6 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.417e-21
Identity = 63/176 (35.80%), Postives = 89/176 (50.57%), Query Frame = 2
Query:  155 LDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGYV----------DAENDGGTPLHSKAGKETIDLKRSKRVDQILALLQRKLPP 637
            L    + DYF      FYD  CNNE +RM+ + P     L  M G+EY+L  V EP L+VIRK+ R  P + TP+  YY++ G++Y+AP L NV ++RI   +  +Q AF  A+S        GY           D         +S   + +  L + +RVD +LA L RK PP
Sbjct:   24 LSPQTVMDYFCRKSNPFYDHMCNNETVRMQRLGP---EHLHNMIGLEYILLHVAEPILYVIRKQHRHNPSEATPIADYYIIGGTVYKAPDLANVINSRILNTVVNLQSAFEEASSYARYHPNKGYTWDFSSNKVFSDRSKSDKKDANSAKDENSGTLFQKQRVDMLLAELLRKFPP 196          
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_CANAL (Mediator of RNA polymerase II transcription subunit 6 OS=Candida albicans GN=MED6 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.620e-17
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 2
Query:  155 LDRNMIFDYFTLSLFYDRTCNNEQLRMR------------SIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 445
            L+ N + +YF+LS FYDRT NN+ L M+            S H    S+LS+MTGIE++++   EP  ++IRK+KR  P+    +  YY++  ++YQAP++ +V S+R+
Sbjct:   20 LNTNNVLEYFSLSPFYDRTSNNQVLMMQFQYQQIQIPPGVSFHQYFQSRLSEMTGIEFVIAYTKEPDFWIIRKQKRQDPQNTVTLQDYYIIGANVYQAPRIYDVLSSRL 128          
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_YARLI (Mediator of RNA polymerase II transcription subunit 6 OS=Yarrowia lipolytica GN=MED6 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.126e-16
Identity = 54/167 (32.34%), Postives = 90/167 (53.89%), Query Frame = 2
Query:  122 FRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLRMRS---------IHPLDISQ-LSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAA-----SKLEKIGYVDAE-----NDGGTPLHSKA 559
            +R   W+  +  L  + + DYF  S FYDR  NN+ LRM++         + P    Q L KMTGIE++++ V EP L+VI+K+ R  P++ TP+ TY+V++ ++Y AP +  +  +R+     ++++A   A      S  +   Y D++     +D  TP  SKA
Sbjct:    9 WRSPEWIQAHQGLRTDNVLDYFAESPFYDRVSNNQVLRMQTQFNQQQTGQLTPQHFEQELQKMTGIEFVITHVREPDLWVIKKQNRLNPQQTTPISTYFVINENVYMAPTVAAIMQSRVLSTSMFLKRALEEAIELPSYSPSQGYTYEDSQLTTAGDDDSTPQASKA 175          
The following BLAST results are available for this feature:
BLAST of FC932419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
MED6_DICDI9.189e-2737.02Putative mediator of RNA polymerase II transcripti... [more]
MED6_MOUSE1.123e-2437.43Mediator of RNA polymerase II transcription subuni... [more]
MED6_HUMAN1.123e-2437.43Mediator of RNA polymerase II transcription subuni... [more]
MED6_BOVIN2.502e-2436.90Mediator of RNA polymerase II transcription subuni... [more]
MED6_PONAB3.268e-2436.90Mediator of RNA polymerase II transcription subuni... [more]
MED6_ANOGA1.373e-2235.29Mediator of RNA polymerase II transcription subuni... [more]
MED6_DANRE2.342e-2235.83Mediator of RNA polymerase II transcription subuni... [more]
MED6_DROME4.417e-2135.80Mediator of RNA polymerase II transcription subuni... [more]
MED6_CANAL8.620e-1738.53Mediator of RNA polymerase II transcription subuni... [more]
MED6_YARLI1.126e-1632.34Mediator of RNA polymerase II transcription subuni... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34208D07EF PostHarveN Citrus clementina cDNA clone C34208D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932419 ID=FC932419; Name=FC932419; organism=Citrus clementina; type=EST; length=637bp
GGAAACGCACAGCATTCACTCATCAAACTTAAACATGGCGACGCCACCAC
CGGGGGCGAACCTCGAGGGCGCACCACCGGCGGCCCCACCGCCACCGGGT
ACGGACATGACGGGGATCTGCTTCAGGGACCAATTGTGGCTAAACACATA
CCCACTTGATCGAAACATGATATTTGATTACTTCACGTTGTCTCTGTTTT
ATGATAGGACTTGCAACAATGAACAGCTCAGAATGCGGTCCATCCACCCT
CTAGACATCTCTCAACTCTCGAAAATGACCGGCATTGAATACATGCTTAG
TGAAGTTATGGAGCCCCACCTCTTTGTTATCCGTAAGCGAAAAAGGGATG
GTCCCGAGAAAGTCACACCAATGCTCACTTATTATGTATTGGATGGTTCA
ATTTACCAAGCACCACAACTTTGCAATGTCTTTTCGGCTAGAATTGGACG
GGCTCTCCACTATATACAGAAGGCTTTTACAACTGCTGCCTCGAAGTTGG
AGAAGATTGGATATGTTGATGCTGAAAATGATGGAGGTACCCCTCTCCAC
TCAAAGGCTGGTAAAGAGACAATTGATTTGAAAAGAAGTAAGCGAGTAGA
TCAAATACTTGCCCTCCTACAGCGCAAGCTACCACCG
back to top