FC932419
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_DICDI (Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium discoideum GN=med6 PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 9.189e-27 Identity = 67/181 (37.02%), Postives = 105/181 (58.01%), Query Frame = 2 Query: 104 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY-VDAENDGGTPLHSKAGKETIDLKRSKRVDQILALLQRKLP 634 D+T + +RD LWL YPL+ I YF+ S FYD+ CNNEQL+M+ LD+S L M G+EY L + +EP F+I K+ R P V YYV++G+IYQAP+L VF +R+ +++ ++ +AF + +S + GY ++ + A ++ +KR+DQ++ L K P Sbjct: 65 DLTQVMWRDPLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQR---LDLSALKNMDGLEYELIKFVEPSFFLIAKQTRISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISHLSEAFNSISSIVNWDIVNGYSLNLDPSNQQEKSKLAAYSRKQIEDTKRLDQLINSLFIKFP 242
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_MOUSE (Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus GN=Med6 PE=2 SV=2) HSP 1 Score: 113.235 bits (282), Expect = 1.123e-24 Identity = 70/187 (37.43%), Postives = 105/187 (56.15%), Query Frame = 2 Query: 104 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKRSKRVDQILALLQRKLPP 637 ++ GI + D W+ L+ + DYF+ + FYDRTCNNE ++M+ L + L++M GIEY+L EP LF+IRK++R P +V P+ YY++ G IYQAP L +V ++R+ A+H IQ AF A S GY D E +K +E + + +RVD +L L++K PP Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQEKVKPKAKRKEEPSSIFQRQRVDALLIDLRQKFPP 190
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_HUMAN (Mediator of RNA polymerase II transcription subunit 6 OS=Homo sapiens GN=MED6 PE=1 SV=2) HSP 1 Score: 113.235 bits (282), Expect = 1.123e-24 Identity = 70/187 (37.43%), Postives = 105/187 (56.15%), Query Frame = 2 Query: 104 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKRSKRVDQILALLQRKLPP 637 ++ GI + D W+ L+ + DYF+ + FYDRTCNNE ++M+ L + L++M GIEY+L EP LF+IRK++R P +V P+ YY++ G IYQAP L +V ++R+ A+H IQ AF A S GY D E +K +E + + +RVD +L L++K PP Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDALLLDLRQKFPP 190
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_BOVIN (Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus GN=MED6 PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.502e-24 Identity = 69/187 (36.90%), Postives = 104/187 (55.61%), Query Frame = 2 Query: 104 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKRSKRVDQILALLQRKLPP 637 ++ GI + D W+ L+ + DYF+ + FYDRTCNNE ++M+ L + L++M G+EY+L EP LF+IRK++R P +V P+ YY++ G IYQAP L +V ++R+ A+H IQ AF A S GY D E K +E + + +RVD +L L++K PP Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKVKRKEEPSSIFQRQRVDALLLDLRQKFPP 190
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_PONAB (Mediator of RNA polymerase II transcription subunit 6 OS=Pongo abelii GN=MED6 PE=2 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.268e-24 Identity = 69/187 (36.90%), Postives = 105/187 (56.15%), Query Frame = 2 Query: 104 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKRSKRVDQILALLQRKLPP 637 ++ GI + D W+ L+ + DYF+ + FYDRTCNNE ++M+ L + L++M GIEY+L EP LF+IRK++R P +V P+ YY++ G IYQAP L +V ++R+ A+H IQ AF A S GY + E +K +E + + +RVD +L L++K PP Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKEHEEQDKVRPKAKRKEEPSSIFQRQRVDALLLDLRQKFPP 190
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_ANOGA (Mediator of RNA polymerase II transcription subunit 6 OS=Anopheles gambiae GN=MED6 PE=3 SV=3) HSP 1 Score: 106.301 bits (264), Expect = 1.373e-22 Identity = 66/187 (35.29%), Postives = 101/187 (54.01%), Query Frame = 2 Query: 116 ICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY---------VDAENDGGTPLHSKAGKETIDLKRSKRVDQILALLQRKLP 634 I + D W+ L+ + DYF+ + FYDRTCNNE +RM+ + L+ MTG+EY+ V +P L+VIRK+ R P + TPM YY++ G++YQAP L +VF++RI +H++Q AF A+S GY + + T + +E + + +RVD +L L RK P Sbjct: 19 ISWHDSNWIPV--LNPGNVMDYFSEKSNPFYDRTCNNEIVRMQR---QSLELLNNMTGVEYIPLHVQDPILYVIRKQHRHSPTEATPMADYYIIAGTVYQAPDLASVFNSRILSTVHHLQTAFDEASSYSRYHPSKGYSWDFSSNKAIAEKTKTQTKKEAPVKEEPSSIFQRQRVDMLLGDLLRKFP 200
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_DANRE (Mediator of RNA polymerase II transcription subunit 6 OS=Danio rerio GN=med6 PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.342e-22 Identity = 67/187 (35.83%), Postives = 103/187 (55.08%), Query Frame = 2 Query: 104 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKRSKRVDQILALLQRKLPP 637 ++ GI + D W+ L+ + + +YF+ + FYDRTCNNE ++M+ + L+++ G+EY+L EP L++IRK++R P +V P+ YY++ G +YQAP L +V S+R A+H IQ AF A S GY D E SK +E L + +RVD +L L+ K PP Sbjct: 9 NLLGISWVDSGWVPI--LNPSNVLEYFSERSNPFYDRTCNNEVVKMQRS---TLDHLTQLVGVEYILLHTQEPILYIIRKQQRQSPTQVIPLADYYIIAGVVYQAPDLGSVISSRALSAVHGIQSAFDEAMSFCRYHPSKGYWWHFKDQEEKERVKPKSKRKEEPSSLFQRQRVDTLLLDLRNKFPP 190
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_DROME (Mediator of RNA polymerase II transcription subunit 6 OS=Drosophila melanogaster GN=MED6 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 4.417e-21 Identity = 63/176 (35.80%), Postives = 89/176 (50.57%), Query Frame = 2 Query: 155 LDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGYV----------DAENDGGTPLHSKAGKETIDLKRSKRVDQILALLQRKLPP 637 L + DYF FYD CNNE +RM+ + P L M G+EY+L V EP L+VIRK+ R P + TP+ YY++ G++Y+AP L NV ++RI + +Q AF A+S GY D +S + + L + +RVD +LA L RK PP Sbjct: 24 LSPQTVMDYFCRKSNPFYDHMCNNETVRMQRLGP---EHLHNMIGLEYILLHVAEPILYVIRKQHRHNPSEATPIADYYIIGGTVYKAPDLANVINSRILNTVVNLQSAFEEASSYARYHPNKGYTWDFSSNKVFSDRSKSDKKDANSAKDENSGTLFQKQRVDMLLAELLRKFPP 196
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_CANAL (Mediator of RNA polymerase II transcription subunit 6 OS=Candida albicans GN=MED6 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 8.620e-17 Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 2 Query: 155 LDRNMIFDYFTLSLFYDRTCNNEQLRMR------------SIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 445 L+ N + +YF+LS FYDRT NN+ L M+ S H S+LS+MTGIE++++ EP ++IRK+KR P+ + YY++ ++YQAP++ +V S+R+ Sbjct: 20 LNTNNVLEYFSLSPFYDRTSNNQVLMMQFQYQQIQIPPGVSFHQYFQSRLSEMTGIEFVIAYTKEPDFWIIRKQKRQDPQNTVTLQDYYIIGANVYQAPRIYDVLSSRL 128
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_YARLI (Mediator of RNA polymerase II transcription subunit 6 OS=Yarrowia lipolytica GN=MED6 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.126e-16 Identity = 54/167 (32.34%), Postives = 90/167 (53.89%), Query Frame = 2 Query: 122 FRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLRMRS---------IHPLDISQ-LSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAA-----SKLEKIGYVDAE-----NDGGTPLHSKA 559 +R W+ + L + + DYF S FYDR NN+ LRM++ + P Q L KMTGIE++++ V EP L+VI+K+ R P++ TP+ TY+V++ ++Y AP + + +R+ ++++A A S + Y D++ +D TP SKA Sbjct: 9 WRSPEWIQAHQGLRTDNVLDYFAESPFYDRVSNNQVLRMQTQFNQQQTGQLTPQHFEQELQKMTGIEFVITHVREPDLWVIKKQNRLNPQQTTPISTYFVINENVYMAPTVAAIMQSRVLSTSMFLKRALEEAIELPSYSPSQGYTYEDSQLTTAGDDDSTPQASKA 175 The following BLAST results are available for this feature:
BLAST of FC932419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932419 ID=FC932419; Name=FC932419; organism=Citrus clementina; type=EST; length=637bpback to top |