BQ623318

Overview
NameBQ623318
Unique NameBQ623318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length266
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:734..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.569e-24
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  216 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.569e-24
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  216 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.569e-24
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  214 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.569e-24
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  210 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261
[Close]
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.569e-24
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  214 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.676e-24
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            IKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  223 IKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274
[Close]
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.676e-24
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            IKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  227 IKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.676e-24
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            IKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  227 IKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.676e-24
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            +KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  214 LKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.676e-24
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 156
            +KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  155 LKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206
The following BLAST results are available for this feature:
BLAST of BQ623318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CB24_TOBAC1.569e-24100.00Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_NICPL1.569e-24100.00Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_TOBAC1.569e-24100.00Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_ORYSJ1.569e-24100.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ORYSJ1.569e-24100.00Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2B_PINSY2.676e-2498.08Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PYRPY2.676e-2498.08Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY2.676e-2498.08Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB29_MAIZE2.676e-2498.08Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB22_CUCSA2.676e-2498.08Chlorophyll a-b binding protein of LHCII type 1 (F... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00409 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00409 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623318 ID=BQ623318; Name=BQ623318; organism=Citrus sinensis; type=EST; length=266bp
ATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCA
GGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGG
CTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCC
GGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGA
TATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGA
TTATTTATAAAATGCT
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