BQ623323

Overview
NameBQ623323
Unique NameBQ623323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623323_ssr305 microsatellite BQ623323_ssr305:305..316. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1944 contig Csv1_Contig1944:75..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623323 vs. ExPASy Swiss-Prot
Match: PSBQ_SPIOL (Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea GN=PSBQ PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.423e-45
Identity = 100/174 (57.47%), Postives = 118/174 (67.82%), Query Frame = 3
Query:   54 GLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLP-LKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLTLSFLLSPK 572
            GLRG+S  QAVLEGS Q+SG NRL+ P+ SRVAV + G  +RAQQ S E ETSRRAM+G VAAG+ASGSFV+AVLA+A PI V            T NSD+ RD  LP  K+RF++QPL P            +ILNVK+ ID+KAWP +QNDLRLRASYLRYDL       PK
Sbjct:   10 GLRGAS--QAVLEGSLQISGSNRLSGPTTSRVAVPKMGLNIRAQQVSAEAETSRRAMLGFVAAGLASGSFVKAVLAEARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPK 181          

HSP 2 Score: 23.483 bits (49), Expect = 2.423e-45
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 2
Query:  548 TIISAKPKDENNPSRTL 598
            T+ISAKPKDE    + L
Sbjct:  174 TVISAKPKDEKKSLQEL 190          
BLAST of BQ623323 vs. ExPASy Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 1.187e-44
Identity = 101/175 (57.71%), Postives = 119/175 (68.00%), Query Frame = 3
Query:   54 GLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVA--RSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLTLSFLLSPK 572
            GLRG+S  QAVLEGS Q++G NRLN    SRV+V   R+G  +RAQQ  + PE+SRR++IGLVAAG+A GSFV+AV A+A PIKV            T NSD+ RD  L LK+RF+IQPLSP           K+I+NVK  IDKKAWPYVQNDLRLRASYLRYDL       PK
Sbjct:   10 GLRGAS--QAVLEGSLQINGSNRLNI---SRVSVGSQRTGLVIRAQQNVSVPESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPK 179          

HSP 2 Score: 22.7126 bits (47), Expect = 1.187e-44
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  545 HTIISAKPKDENNPSRTL 598
            +T+ISAKPK+E    + L
Sbjct:  171 NTVISAKPKEEKQSLKDL 188          
BLAST of BQ623323 vs. ExPASy Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 5.100e-39
Identity = 98/175 (56.00%), Postives = 115/175 (65.71%), Query Frame = 3
Query:   54 GLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVA-RSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXX-TLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLTLSFLLSPK 572
            GL G+S   AVLEGS +++G +RLN   + RVAVA RS   VRAQQ+    ETSRR++IGLVAAG+A GSFVQAVLADA  IKV             T NSD+ RD  L LK+RF++QPL P           KDI+NVK LID+KAWPYVQNDLR +ASYLRYDL       PK
Sbjct:    6 GLHGAS--PAVLEGSLKINGSSRLNG--SGRVAVAQRSRLVVRAQQSE---ETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPK 173          

HSP 2 Score: 23.483 bits (49), Expect = 5.100e-39
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  545 HTIISAKPKDENNPSRTL 598
            +TIIS+KPKDE    + L
Sbjct:  165 NTIISSKPKDEKKSLKDL 182          
BLAST of BQ623323 vs. ExPASy Swiss-Prot
Match: PSBQ_ONOVI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Onobrychis viciifolia GN=PSBQ PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.442e-33
Identity = 89/176 (50.57%), Postives = 107/176 (60.80%), Query Frame = 3
Query:   75 SQAVLEGSSQL-SGPNRLNAPSNSRVAVARSGFTVRAQQ---------ASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLTLSFLLSPK 572
            +  +LEGS QL SG NR  + S+SR       F VRAQQ         ++ +P+++RRAM+GLVA G+AS SFVQAVLA+A PIKV            TLNSDE RDL LPLKERF+IQPLSP           K+I+ VK+ ID+K      NDLRLRASYLRYDL       PK
Sbjct:    6 ASGLLEGSLQLMSGSNR--SSSSSRTRGPAGVFIVRAQQQEQQQGMSSSAADPQSNRRAMLGLVATGLASASFVQAVLAEAKPIKVGGPPPPSGGLGGTLNSDEARDLKLPLKERFYIQPLSPTEAAQRQRESAKEIVAVKKFIDQKLGHMFINDLRLRASYLRYDLNTVISSKPK 179          
BLAST of BQ623323 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSJ (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0544800 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 7.214e-31
Identity = 76/162 (46.91%), Postives = 99/162 (61.11%), Query Frame = 3
Query:   90 EGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLTLSFLLSPK 572
            +G    +GP R  A   SR+AV      VRA  A+ + +T RRA++GLVA G+A G+  QA LA+A  PIK+            TLNSD+ RD DLPL+ERF++QPL P           +DI+N+K LI+KK WP+V++DLRLRASYLRYDL       PK
Sbjct:   13 QGVQLPAGPRR--AGGRSRLAV------VRADAAAADVQTGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLRERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPK 166          

HSP 2 Score: 21.1718 bits (43), Expect = 7.214e-31
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 2
Query:  548 TIISAKPKDENNPSRTL 598
            T+I++KPKDE    + L
Sbjct:  159 TVINSKPKDEKKGLKDL 175          
BLAST of BQ623323 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 7.214e-31
Identity = 76/162 (46.91%), Postives = 99/162 (61.11%), Query Frame = 3
Query:   90 EGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLTLSFLLSPK 572
            +G    +GP R  A   SR+AV      VRA  A+ + +T RRA++GLVA G+A G+  QA LA+A  PIK+            TLNSD+ RD DLPL+ERF++QPL P           +DI+N+K LI+KK WP+V++DLRLRASYLRYDL       PK
Sbjct:   13 QGVQLPAGPRR--AGGRSRLAV------VRADAAAADVQTGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLRERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPK 166          

HSP 2 Score: 21.1718 bits (43), Expect = 7.214e-31
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 2
Query:  548 TIISAKPKDENNPSRTL 598
            T+I++KPKDE    + L
Sbjct:  159 TVINSKPKDEKKGLKDL 175          
BLAST of BQ623323 vs. ExPASy Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.309e-29
Identity = 79/170 (46.47%), Postives = 97/170 (57.06%), Query Frame = 3
Query:   69 SHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNE-PETSRRAMIGLVAAGVASGSFVQAVLADATP-IKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLTLSFLLSPK 572
            + + A + G SQ   P+R  A S +R AV      VRA    +   +  RRA+IGLVA G+  G+  QA  A+    IK+            TLNSD+ RD DLPLKERF++QPL P           +DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL       PK
Sbjct:    2 AQAMASMTGLSQGVLPSR-RADSRTRTAVV----IVRASAEGDAVAQAGRRAVIGLVATGIVGGALSQAARAETVKTIKIGAPPPPSGGLPGTLNSDQARDFDLPLKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPK 166          
BLAST of BQ623323 vs. ExPASy Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.450e-23
Identity = 68/169 (40.24%), Postives = 89/169 (52.66%), Query Frame = 3
Query:   69 SHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATP-IKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLTLSFLLSPK 572
            + + A + G SQ   P   ++ + + V V R+  +    + +  P   R      + A  +S    QAV A+    IK+            TLNSD+ RD DLPLKERF++QPL P           +DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL       PK
Sbjct:    2 AQAMASMTGLSQGVCPAAADSRTRTAVVVVRA--SAEGDRCAGGPRCDR------LVATASSPPLSQAVHAETVKTIKIGAPPPPSGGLPGTLNSDQTRDFDLPLKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPK 162          
The following BLAST results are available for this feature:
BLAST of BQ623323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSBQ_SPIOL2.423e-4557.47Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ2_ARATH1.187e-4457.71Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
PSBQ1_ARATH5.100e-3956.00Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ_ONOVI3.442e-3350.57Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ORYSJ7.214e-3146.91Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ORYSI7.214e-3146.91Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ1_MAIZE2.309e-2946.47Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ2_MAIZE1.450e-2340.24Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00414 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00414 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623323 ID=BQ623323; Name=BQ623323; organism=Citrus sinensis; type=EST; length=602bp
GTTTCTGAAACCTGATTTAGTGAAAAATGGCACAAGCTATGGCGTCAATG
GCTGGCTTACGTGGATCCTCCCACTCGCAGGCTGTTCTTGAAGGTAGCTC
CCAGCTCAGTGGCCCAAACCGCTTGAACGCCCCTAGCAACAGCAGAGTTG
CTGTGGCTCGCTCTGGTTTCACTGTTAGAGCCCAGCAGGCATCAAACGAG
CCTGAAACTAGCCGCCGTGCTATGATTGGTCTTGTTGCTGCAGGTGTGGC
CTCAGGTTCCTTTGTTCAAGCTGTACTTGCTGATGCCACTCCCATCAAAG
TTGGTCCTCCTCCTCCACCCTCTGGCGGATTGCCTGGAACGTTGAACTCT
GATGAGCCAAGAGACCTGGATCTGCCACTGAAGGAGAGGTTCTTCATCCA
ACCACTTAGTCCAGCCCAGGCGGCAGAGAGAGCAAAGGCGTCAGCAAAGG
ATATTCTTAATGTCAAGGAATTAATAGACAAGAAGGCCTGGCCCTATGTT
CAAAATGATCTCCGTCTCAGGGCCTCATACCTTCGCTATGACCTCACACT
ATCATTTCTGCTAAGCCCAAAGATGAGAACAATCCCTCAAGAACCTTACT
TG
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